Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EL244_RS06750 | Genome accession | NZ_LR134396 |
| Coordinates | 1497493..1497999 (-) | Length | 168 a.a. |
| NCBI ID | WP_126459657.1 | Uniprot ID | - |
| Organism | Providencia rustigianii strain NCTC8113 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1493543..1543942 | 1497493..1497999 | within | 0 |
Gene organization within MGE regions
Location: 1493543..1543942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL244_RS06710 (NCTC8113_01353) | - | 1493543..1494826 (-) | 1284 | WP_126459632.1 | site-specific integrase | - |
| EL244_RS06715 (NCTC8113_01354) | xisR | 1494834..1495070 (-) | 237 | WP_126459636.1 | excisionase family protein | - |
| EL244_RS18285 (NCTC8113_01355) | - | 1495063..1495308 (-) | 246 | WP_154631208.1 | hypothetical protein | - |
| EL244_RS06725 (NCTC8113_01356) | - | 1495280..1495474 (-) | 195 | WP_126459642.1 | hypothetical protein | - |
| EL244_RS06730 (NCTC8113_01357) | - | 1495482..1496027 (-) | 546 | WP_126459645.1 | phage N-6-adenine-methyltransferase | - |
| EL244_RS06735 (NCTC8113_01358) | - | 1496017..1496235 (-) | 219 | WP_126459648.1 | hypothetical protein | - |
| EL244_RS18380 | - | 1496232..1496429 (-) | 198 | WP_419179612.1 | DUF7301 family protein | - |
| EL244_RS06740 (NCTC8113_01360) | - | 1496603..1497139 (-) | 537 | WP_126459651.1 | hypothetical protein | - |
| EL244_RS06745 (NCTC8113_01361) | - | 1497255..1497452 (-) | 198 | WP_126459654.1 | hypothetical protein | - |
| EL244_RS06750 (NCTC8113_01362) | ssb | 1497493..1497999 (-) | 507 | WP_126459657.1 | single-stranded DNA-binding protein | Machinery gene |
| EL244_RS06755 (NCTC8113_01363) | - | 1497999..1498574 (-) | 576 | WP_126459660.1 | ERF family protein | - |
| EL244_RS18290 (NCTC8113_01364) | - | 1498590..1499012 (-) | 423 | WP_126459662.1 | hypothetical protein | - |
| EL244_RS18295 (NCTC8113_01366) | - | 1499043..1499243 (-) | 201 | WP_126459665.1 | hypothetical protein | - |
| EL244_RS06770 (NCTC8113_01368) | - | 1499465..1500373 (-) | 909 | WP_126459668.1 | cell envelope biogenesis protein TolA | - |
| EL244_RS17900 (NCTC8113_01369) | - | 1500388..1500561 (-) | 174 | WP_172597505.1 | hypothetical protein | - |
| EL244_RS06775 (NCTC8113_01370) | - | 1500591..1500863 (-) | 273 | WP_126459671.1 | hypothetical protein | - |
| EL244_RS06780 (NCTC8113_01371) | - | 1500976..1502709 (-) | 1734 | WP_126459674.1 | DUF262 domain-containing protein | - |
| EL244_RS06785 (NCTC8113_01372) | - | 1502991..1503305 (-) | 315 | WP_230084848.1 | hypothetical protein | - |
| EL244_RS06790 (NCTC8113_01373) | - | 1503665..1504351 (-) | 687 | WP_230084849.1 | S24 family peptidase | - |
| EL244_RS06795 (NCTC8113_01374) | - | 1504468..1504653 (+) | 186 | WP_126459677.1 | Cro/CI family transcriptional regulator | - |
| EL244_RS06800 (NCTC8113_01375) | - | 1504760..1505104 (+) | 345 | WP_126459680.1 | hypothetical protein | - |
| EL244_RS06805 (NCTC8113_01376) | - | 1505174..1505863 (+) | 690 | WP_172597506.1 | GIY-YIG nuclease family protein | - |
| EL244_RS18300 (NCTC8113_01377) | - | 1505863..1506648 (+) | 786 | WP_105881152.1 | hypothetical protein | - |
| EL244_RS06815 (NCTC8113_01378) | - | 1506648..1507376 (+) | 729 | WP_109911125.1 | ATP-binding protein | - |
| EL244_RS06820 (NCTC8113_01379) | - | 1507392..1507616 (+) | 225 | WP_126459683.1 | hypothetical protein | - |
| EL244_RS06825 (NCTC8113_01380) | - | 1507648..1507920 (+) | 273 | WP_126459686.1 | hypothetical protein | - |
| EL244_RS06830 (NCTC8113_01381) | - | 1507920..1508243 (+) | 324 | WP_126459689.1 | hypothetical protein | - |
| EL244_RS18385 (NCTC8113_01382) | - | 1508230..1508478 (+) | 249 | WP_126459692.1 | DUF551 domain-containing protein | - |
| EL244_RS06840 (NCTC8113_01383) | - | 1508478..1508753 (+) | 276 | WP_126459695.1 | hypothetical protein | - |
| EL244_RS06845 (NCTC8113_01384) | - | 1508756..1509127 (+) | 372 | WP_126459697.1 | phage protein NinX family protein | - |
| EL244_RS06850 (NCTC8113_01385) | - | 1509130..1509351 (+) | 222 | WP_232004567.1 | DUF7279 family protein | - |
| EL244_RS06855 (NCTC8113_01386) | - | 1509353..1509799 (+) | 447 | WP_126459700.1 | DUF1367 family protein | - |
| EL244_RS06860 | - | 1509812..1510027 (+) | 216 | WP_126459703.1 | hypothetical protein | - |
| EL244_RS06865 (NCTC8113_01387) | - | 1510258..1510548 (+) | 291 | WP_126459706.1 | DUF1364 domain-containing protein | - |
| EL244_RS06870 | - | 1510545..1510910 (+) | 366 | WP_126459709.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EL244_RS06875 (NCTC8113_01389) | - | 1511097..1511600 (+) | 504 | WP_126459712.1 | antiterminator Q family protein | - |
| EL244_RS06880 (NCTC8113_01390) | - | 1512370..1512687 (+) | 318 | WP_036965310.1 | phage holin, lambda family | - |
| EL244_RS06885 (NCTC8113_01391) | - | 1512680..1513072 (+) | 393 | WP_126459715.1 | M15 family metallopeptidase | - |
| EL244_RS17995 | lysC | 1513316..1513615 (+) | 300 | WP_230084850.1 | hypothetical protein | - |
| EL244_RS17905 (NCTC8113_01393) | - | 1513612..1513779 (+) | 168 | WP_154600546.1 | hypothetical protein | - |
| EL244_RS06895 (NCTC8113_01394) | - | 1514106..1514777 (+) | 672 | WP_126459721.1 | GIY-YIG nuclease family protein | - |
| EL244_RS06900 (NCTC8113_01395) | - | 1514948..1515187 (+) | 240 | WP_126459724.1 | hypothetical protein | - |
| EL244_RS06905 | - | 1515241..1515441 (+) | 201 | WP_126459727.1 | hypothetical protein | - |
| EL244_RS06910 (NCTC8113_01396) | - | 1515445..1515690 (+) | 246 | WP_126459730.1 | DUF2560 family protein | - |
| EL244_RS06915 (NCTC8113_01397) | - | 1515744..1516346 (+) | 603 | WP_126459733.1 | hypothetical protein | - |
| EL244_RS06920 (NCTC8113_01398) | - | 1516349..1517833 (+) | 1485 | WP_126459738.1 | terminase | - |
| EL244_RS06925 (NCTC8113_01399) | - | 1517835..1519211 (+) | 1377 | WP_126459741.1 | DUF4055 domain-containing protein | - |
| EL244_RS06930 (NCTC8113_01400) | - | 1519220..1520284 (+) | 1065 | WP_126459744.1 | minor capsid protein | - |
| EL244_RS06935 (NCTC8113_01401) | - | 1520359..1521045 (+) | 687 | WP_126462753.1 | hypothetical protein | - |
| EL244_RS06940 (NCTC8113_01402) | - | 1521051..1522001 (+) | 951 | WP_126459746.1 | major capsid protein | - |
| EL244_RS06945 (NCTC8113_01403) | - | 1522045..1522422 (+) | 378 | WP_126459749.1 | DUF7370 family protein | - |
| EL244_RS06950 (NCTC8113_01404) | - | 1522424..1522795 (+) | 372 | WP_126459751.1 | hypothetical protein | - |
| EL244_RS06955 (NCTC8113_01405) | - | 1522797..1523153 (+) | 357 | WP_126459754.1 | HK97 gp10 family phage protein | - |
| EL244_RS06960 (NCTC8113_01406) | - | 1523150..1523518 (+) | 369 | WP_126459756.1 | hypothetical protein | - |
| EL244_RS06965 (NCTC8113_01407) | - | 1523580..1524320 (+) | 741 | WP_126459759.1 | Ig-like domain-containing protein | - |
| EL244_RS06970 (NCTC8113_01408) | - | 1524369..1525055 (+) | 687 | WP_126459761.1 | DUF6246 family protein | - |
| EL244_RS06975 (NCTC8113_01409) | - | 1525058..1525318 (+) | 261 | WP_126459763.1 | hypothetical protein | - |
| EL244_RS06980 (NCTC8113_01410) | - | 1525327..1525572 (-) | 246 | WP_126459766.1 | Arc family DNA-binding protein | - |
| EL244_RS06985 (NCTC8113_01411) | - | 1525846..1526844 (+) | 999 | WP_230084851.1 | hypothetical protein | - |
| EL244_RS06990 (NCTC8113_01412) | - | 1526912..1527760 (-) | 849 | WP_126459771.1 | ORF6N domain-containing protein | - |
| EL244_RS18390 | - | 1527831..1527989 (-) | 159 | WP_081335999.1 | Arc family DNA-binding protein | - |
| EL244_RS07000 (NCTC8113_01413) | - | 1528104..1528349 (+) | 246 | WP_126459773.1 | Arc family DNA-binding protein | - |
| EL244_RS07005 (NCTC8113_01414) | - | 1528450..1529295 (+) | 846 | WP_126459776.1 | ParA family protein | - |
| EL244_RS07010 (NCTC8113_01415) | - | 1529282..1529701 (+) | 420 | WP_230084852.1 | hypothetical protein | - |
| EL244_RS18000 | - | 1529981..1530349 (+) | 369 | WP_232004568.1 | hypothetical protein | - |
| EL244_RS07020 (NCTC8113_01416) | - | 1530456..1531604 (+) | 1149 | WP_126459780.1 | hypothetical protein | - |
| EL244_RS07025 (NCTC8113_01417) | - | 1531676..1534918 (+) | 3243 | WP_126459783.1 | hypothetical protein | - |
| EL244_RS07030 (NCTC8113_01418) | - | 1534928..1535551 (+) | 624 | WP_126459786.1 | hypothetical protein | - |
| EL244_RS07035 (NCTC8113_01419) | - | 1535584..1536066 (+) | 483 | WP_126459788.1 | hypothetical protein | - |
| EL244_RS07040 (NCTC8113_01420) | - | 1536063..1536530 (+) | 468 | WP_036943373.1 | DUF1833 family protein | - |
| EL244_RS07045 (NCTC8113_01421) | - | 1536623..1536922 (+) | 300 | WP_336426557.1 | peptidoglycan endopeptidase | - |
| EL244_RS07050 (NCTC8113_01422) | - | 1536909..1539383 (+) | 2475 | WP_126459793.1 | host specificity factor TipJ family phage tail protein | - |
| EL244_RS07055 (NCTC8113_01423) | - | 1539446..1541464 (+) | 2019 | WP_126459796.1 | M14 family zinc carboxypeptidase | - |
| EL244_RS07060 (NCTC8113_01424) | - | 1541615..1541773 (-) | 159 | Protein_1366 | DNA polymerase III subunit theta | - |
| EL244_RS07065 (NCTC8113_01425) | - | 1542260..1542667 (+) | 408 | WP_126459800.1 | hypothetical protein | - |
| EL244_RS07075 (NCTC8113_01427) | - | 1543116..1543475 (+) | 360 | WP_126459805.1 | hypothetical protein | - |
| EL244_RS07080 (NCTC8113_01428) | - | 1543655..1543942 (+) | 288 | WP_126459808.1 | putative quinol monooxygenase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18562.89 Da Isoelectric Point: 7.3147
>NTDB_id=1122751 EL244_RS06750 WP_126459657.1 1497493..1497999(-) (ssb) [Providencia rustigianii strain NCTC8113]
MASRGVNKVILIGHLGNDPEIRYMPNGGAVANLTLATSESWRDKQSGEMREKTEWHKVIIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGNGNSNQAGSQQPARQPQPPRQQAPQNEPPMDFSDDIPFAPIGLPY
PRHAIYVI
MASRGVNKVILIGHLGNDPEIRYMPNGGAVANLTLATSESWRDKQSGEMREKTEWHKVIIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGNGNSNQAGSQQPARQPQPPRQQAPQNEPPMDFSDDIPFAPIGLPY
PRHAIYVI
Nucleotide
Download Length: 507 bp
>NTDB_id=1122751 EL244_RS06750 WP_126459657.1 1497493..1497999(-) (ssb) [Providencia rustigianii strain NCTC8113]
ATGGCTAGTCGCGGAGTAAATAAGGTAATTCTCATTGGTCACTTAGGTAATGATCCTGAAATTCGGTACATGCCTAACGG
TGGCGCAGTAGCAAATCTCACACTAGCTACATCGGAATCGTGGCGTGATAAACAATCGGGTGAAATGCGCGAAAAAACAG
AGTGGCATAAAGTGATAATTTTCGGCAAGTTAGCTGAAGTTGCAGGTGAATATCTGAAAAAAGGATCACAAGTCTATATC
GAAGGTTCTTTGCAAACGCGTAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACGGAAGTGGTGGTAAATATCGG
CGGCTCTATGCAGATGTTGGGTGGCAATGGTAACAGCAATCAGGCAGGAAGCCAGCAACCAGCGCGACAACCTCAGCCGC
CACGCCAGCAAGCACCGCAGAATGAGCCACCGATGGATTTCTCAGACGATATTCCGTTCGCTCCTATCGGGCTCCCCTAC
CCACGCCACGCTATTTATGTGATTTAA
ATGGCTAGTCGCGGAGTAAATAAGGTAATTCTCATTGGTCACTTAGGTAATGATCCTGAAATTCGGTACATGCCTAACGG
TGGCGCAGTAGCAAATCTCACACTAGCTACATCGGAATCGTGGCGTGATAAACAATCGGGTGAAATGCGCGAAAAAACAG
AGTGGCATAAAGTGATAATTTTCGGCAAGTTAGCTGAAGTTGCAGGTGAATATCTGAAAAAAGGATCACAAGTCTATATC
GAAGGTTCTTTGCAAACGCGTAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACGGAAGTGGTGGTAAATATCGG
CGGCTCTATGCAGATGTTGGGTGGCAATGGTAACAGCAATCAGGCAGGAAGCCAGCAACCAGCGCGACAACCTCAGCCGC
CACGCCAGCAAGCACCGCAGAATGAGCCACCGATGGATTTCTCAGACGATATTCCGTTCGCTCCTATCGGGCTCCCCTAC
CCACGCCACGCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.232 |
100 |
0.708 |
| ssb | Glaesserella parasuis strain SC1401 |
53.591 |
100 |
0.577 |
| ssb | Neisseria gonorrhoeae MS11 |
47.159 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.488 |