Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | EL190_RS03460 | Genome accession | NZ_LR134395 |
| Coordinates | 660427..660840 (+) | Length | 137 a.a. |
| NCBI ID | WP_006995133.1 | Uniprot ID | - |
| Organism | Haemophilus aegyptius strain NCTC8134 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 655427..665840
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL190_RS03440 (NCTC8134_00698) | - | 655909..658509 (-) | 2601 | WP_006995137.1 | penicillin-binding protein 1A | - |
| EL190_RS03445 (NCTC8134_00700) | - | 658608..659405 (+) | 798 | Protein_660 | competence protein ComA | - |
| EL190_RS03450 (NCTC8134_00701) | comB | 659406..659912 (+) | 507 | WP_006995134.1 | competence protein ComB | Machinery gene |
| EL190_RS03455 (NCTC8134_00702) | comC | 659909..660430 (+) | 522 | WP_005662592.1 | competence protein ComC | Machinery gene |
| EL190_RS03460 (NCTC8134_00703) | comD | 660427..660840 (+) | 414 | WP_006995133.1 | pilus assembly protein PilP | Machinery gene |
| EL190_RS03465 (NCTC8134_00704) | comE | 660850..662187 (+) | 1338 | WP_006995132.1 | type IV pilus secretin PilQ | Machinery gene |
| EL190_RS03470 (NCTC8134_00705) | - | 662200..662886 (+) | 687 | WP_006995131.1 | ComF family protein | - |
| EL190_RS03475 (NCTC8134_00706) | nfuA | 662962..663558 (+) | 597 | WP_006995130.1 | Fe-S biogenesis protein NfuA | - |
| EL190_RS03480 | nudC | 663625..664420 (+) | 796 | Protein_667 | NAD(+) diphosphatase | - |
| EL190_RS03485 (NCTC8134_00709) | - | 664456..665046 (+) | 591 | WP_006995127.1 | YjaG family protein | - |
| EL190_RS03490 (NCTC8134_00710) | - | 665186..665458 (+) | 273 | WP_006995126.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.75 Da Isoelectric Point: 4.4355
>NTDB_id=1122724 EL190_RS03460 WP_006995133.1 660427..660840(+) (comD) [Haemophilus aegyptius strain NCTC8134]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGIDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGIDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1122724 EL190_RS03460 WP_006995133.1 660427..660840(+) (comD) [Haemophilus aegyptius strain NCTC8134]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
94.161 |
100 |
0.942 |
| comD | Haemophilus influenzae 86-028NP |
93.431 |
100 |
0.934 |