Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL201_RS01890 Genome accession   NZ_LR134380
Coordinates   420614..421096 (-) Length   160 a.a.
NCBI ID   WP_027223436.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain NCTC12273     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 415614..426096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL201_RS01850 (NCTC12273_00372) rplO 415747..416181 (+) 435 WP_027223430.1 50S ribosomal protein L15 -
  EL201_RS01855 (NCTC12273_00373) secY 416184..417512 (+) 1329 WP_027223431.1 preprotein translocase subunit SecY -
  EL201_RS01860 rpmJ 417529..417642 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  EL201_RS01865 (NCTC12273_00374) rpsM 417720..418076 (+) 357 WP_027223432.1 30S ribosomal protein S13 -
  EL201_RS01870 (NCTC12273_00375) rpsK 418100..418498 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  EL201_RS01875 (NCTC12273_00376) rpsD 418515..419135 (+) 621 WP_027223433.1 30S ribosomal protein S4 -
  EL201_RS01880 (NCTC12273_00377) - 419154..420146 (+) 993 WP_027223434.1 DNA-directed RNA polymerase subunit alpha -
  EL201_RS01885 (NCTC12273_00378) rplQ 420165..420548 (+) 384 WP_027223435.1 50S ribosomal protein L17 -
  EL201_RS01890 (NCTC12273_00379) ssb 420614..421096 (-) 483 WP_027223436.1 single-stranded DNA-binding protein Machinery gene
  EL201_RS01895 (NCTC12273_00380) - 421180..422544 (-) 1365 WP_027223437.1 MFS transporter -
  EL201_RS01900 (NCTC12273_00381) fabL 422705..423463 (+) 759 WP_027223438.1 enoyl-[acyl-carrier-protein] reductase FabL -
  EL201_RS01905 (NCTC12273_00382) - 423534..423947 (+) 414 WP_027223439.1 acyl carrier protein -
  EL201_RS01910 (NCTC12273_00383) - 423947..424843 (+) 897 WP_027223440.1 3-hydroxyacyl-ACP dehydratase FabZ family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17692.44 Da        Isoelectric Point: 4.8129

>NTDB_id=1122485 EL201_RS01890 WP_027223436.1 420614..421096(-) (ssb) [Legionella pneumophila subsp. pascullei strain NCTC12273]
MARGINKVILVGNVGSDPEVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIIASDIQMLDSKGNSASNYDDMPSFQGTSSPQQAPAKNHSASAASTAQDAFDELDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1122485 EL201_RS01890 WP_027223436.1 420614..421096(-) (ssb) [Legionella pneumophila subsp. pascullei strain NCTC12273]
ATGGCAAGAGGTATTAATAAAGTTATACTGGTAGGTAATGTAGGTTCTGATCCTGAGGTACGCTATTTACCCAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGCGAAACATGGAAGGACAAAACAACTGGTGAAAAGCAGGATAGAACGGAAT
GGCATAGGGTCGTATGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATATATTCGCAAAGGTTCCAAGCTCTATGTTGAA
GGAAGCTTAAGAACAAGAAAATGGCAAGATCAGCAGGGCCAAGATAGATATACAACTGAAATCATTGCATCTGATATTCA
AATGCTCGATAGCAAAGGAAATAGTGCCTCAAATTACGACGACATGCCTTCATTTCAGGGGACATCCTCTCCTCAACAAG
CCCCAGCAAAAAATCACTCAGCATCCGCTGCATCTACCGCACAAGATGCTTTTGATGAATTAGATGATGACATACCTTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.569
  ssb Vibrio cholerae strain A1552

49.714

100

0.544
  ssb Neisseria meningitidis MC58

40.678

100

0.45
  ssb Neisseria gonorrhoeae MS11

40.113

100

0.444

Multiple sequence alignment