Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EL249_RS04015 | Genome accession | NZ_LR134378 |
| Coordinates | 984941..985468 (+) | Length | 175 a.a. |
| NCBI ID | WP_005674198.1 | Uniprot ID | E7RYT1 |
| Organism | Lautropia mirabilis strain NCTC12852 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 979941..990468
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL249_RS04005 (NCTC12852_00795) | uvrA | 980271..983153 (-) | 2883 | WP_040531722.1 | excinuclease ABC subunit UvrA | - |
| EL249_RS04010 (NCTC12852_00796) | - | 983509..984771 (+) | 1263 | WP_005674199.1 | MFS transporter | - |
| EL249_RS04015 (NCTC12852_00797) | ssb | 984941..985468 (+) | 528 | WP_005674198.1 | single-stranded DNA-binding protein | Machinery gene |
| EL249_RS04020 (NCTC12852_00798) | - | 985617..986948 (-) | 1332 | WP_169311692.1 | threonine/serine ThrE exporter family protein | - |
| EL249_RS04025 (NCTC12852_00799) | - | 987164..987514 (+) | 351 | WP_005674196.1 | FmdB family zinc ribbon protein | - |
| EL249_RS04030 (NCTC12852_00800) | - | 987548..988189 (+) | 642 | WP_040531716.1 | DUF502 domain-containing protein | - |
| EL249_RS04035 (NCTC12852_00801) | aspS | 988284..990152 (+) | 1869 | WP_050781920.1 | aspartate--tRNA ligase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18108.76 Da Isoelectric Point: 5.3258
>NTDB_id=1122462 EL249_RS04015 WP_005674198.1 984941..985468(+) (ssb) [Lautropia mirabilis strain NCTC12852]
MASVNKVILVGNLGRDPEVRYTAEGSAITNISVATTSQWKDRNSGERREETEWHRVTFFGRLAEIAGEYLKKGRSVYIEG
RLKTRKYTDANGVEKYATDIIAEQMQMLGGRDGGGDFGGDSGGRSGGYGGGSSGGYGGGASGGGARSGGAAGGGAPAGGN
RPAPTFDDMDDDIPF
MASVNKVILVGNLGRDPEVRYTAEGSAITNISVATTSQWKDRNSGERREETEWHRVTFFGRLAEIAGEYLKKGRSVYIEG
RLKTRKYTDANGVEKYATDIIAEQMQMLGGRDGGGDFGGDSGGRSGGYGGGSSGGYGGGASGGGARSGGAAGGGAPAGGN
RPAPTFDDMDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1122462 EL249_RS04015 WP_005674198.1 984941..985468(+) (ssb) [Lautropia mirabilis strain NCTC12852]
ATGGCATCCGTCAACAAAGTCATCCTGGTGGGCAATCTGGGCCGCGACCCGGAAGTCCGCTACACGGCCGAGGGTTCGGC
CATCACCAACATCTCGGTGGCTACCACCTCGCAGTGGAAGGACCGCAACTCGGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGCGTGACCTTCTTTGGCCGCCTGGCCGAGATCGCCGGTGAGTACCTGAAGAAGGGTCGCTCGGTGTACATCGAGGGC
CGCCTGAAGACCCGCAAGTACACCGATGCCAACGGCGTGGAGAAGTACGCTACCGACATCATCGCCGAGCAGATGCAGAT
GCTGGGTGGCCGTGATGGCGGCGGAGACTTCGGCGGCGACAGCGGTGGCCGTTCCGGTGGCTACGGTGGCGGCTCGTCCG
GGGGCTATGGTGGTGGTGCTTCCGGCGGTGGTGCCCGCAGTGGCGGCGCTGCAGGCGGTGGCGCCCCGGCAGGCGGCAAC
CGTCCGGCCCCCACCTTCGACGACATGGACGACGACATCCCGTTCTGA
ATGGCATCCGTCAACAAAGTCATCCTGGTGGGCAATCTGGGCCGCGACCCGGAAGTCCGCTACACGGCCGAGGGTTCGGC
CATCACCAACATCTCGGTGGCTACCACCTCGCAGTGGAAGGACCGCAACTCGGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGCGTGACCTTCTTTGGCCGCCTGGCCGAGATCGCCGGTGAGTACCTGAAGAAGGGTCGCTCGGTGTACATCGAGGGC
CGCCTGAAGACCCGCAAGTACACCGATGCCAACGGCGTGGAGAAGTACGCTACCGACATCATCGCCGAGCAGATGCAGAT
GCTGGGTGGCCGTGATGGCGGCGGAGACTTCGGCGGCGACAGCGGTGGCCGTTCCGGTGGCTACGGTGGCGGCTCGTCCG
GGGGCTATGGTGGTGGTGCTTCCGGCGGTGGTGCCCGCAGTGGCGGCGCTGCAGGCGGTGGCGCCCCGGCAGGCGGCAAC
CGTCCGGCCCCCACCTTCGACGACATGGACGACGACATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.52 |
| ssb | Neisseria gonorrhoeae MS11 |
49.444 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
49.444 |
100 |
0.509 |
| ssb | Vibrio cholerae strain A1552 |
45.652 |
100 |
0.48 |