Detailed information NTG1122450

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EL255_RS19440
• Genome accession: NZ_LR134376
• Coordinates: 4181456..4182037 (+)
• Length: 193 a.a.
• NCBI ID: WP_042653391.1
• Uniprot ID: -
• Organism: Aeromonas encheleia strain NCTC12917
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4181456..4193720	4181456..4182037	within	0

Gene organization within MGE regions

Location: 4181456..4193720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL255_RS19440 (NCTC12917_03902)	ssb	4181456..4182037 (+)	582	WP_042653391.1	single-stranded DNA-binding protein	Machinery gene
EL255_RS19445 (NCTC12917_03903)	-	4182206..4182976 (+)	771	WP_042653392.1	ABC transporter substrate-binding protein	-
EL255_RS21705 (NCTC12917_03904)	-	4183025..4183147 (-)	123	WP_126623417.1	hypothetical protein	-
EL255_RS19455 (NCTC12917_03905)	yjbD	4183694..4183978 (+)	285	WP_042653393.1	DUF3811 domain-containing protein	-
EL255_RS19460	cspA	4184377..4184589 (+)	213	WP_025328559.1	RNA chaperone/antiterminator CspA	-
EL255_RS19465 (NCTC12917_03907)	-	4184881..4186266 (-)	1386	WP_042653434.1	ATP-binding protein	-
EL255_RS19470 (NCTC12917_03908)	-	4186277..4186999 (-)	723	WP_042653394.1	response regulator	-
EL255_RS19475 (NCTC12917_03909)	-	4187200..4187559 (+)	360	WP_042653395.1	hypothetical protein	-
EL255_RS19480 (NCTC12917_03910)	-	4187719..4188138 (-)	420	WP_042653396.1	hypothetical protein	-
EL255_RS19485 (NCTC12917_03911)	-	4188265..4189272 (-)	1008	WP_042653397.1	sensor domain-containing diguanylate cyclase	-
EL255_RS19490 (NCTC12917_03912)	-	4189459..4190379 (-)	921	WP_232018882.1	helix-turn-helix transcriptional regulator	-
EL255_RS19495 (NCTC12917_03913)	-	4190437..4190835 (+)	399	WP_042653398.1	VOC family protein	-
EL255_RS19500 (NCTC12917_03914)	-	4191119..4191598 (-)	480	WP_084228331.1	GNAT family N-acetyltransferase	-
EL255_RS19505 (NCTC12917_03915)	-	4192016..4192621 (-)	606	WP_170176020.1	HNH endonuclease	-
EL255_RS19510 (NCTC12917_03916)	-	4192599..4193720 (-)	1122	WP_084228332.1	AAA family ATPase	-

Sequence

Protein

• Length: 193 a.a.
• Molecular weight: 21329.69 Da
• Isoelectric Point: 5.9301

>NTDB_id=1122450 EL255_RS19440 WP_042653391.1 4181456..4182037(+) (ssb) [Aeromonas encheleia strain NCTC12917]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSESWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEILVDSFSGVMQMLGGRPQGGAGQSMGGQQSQGNWGQSQQAAPQQNMPRPAAAPQQNMQQ
QGGYSRPQQQQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

• Length: 582 bp

>NTDB_id=1122450 EL255_RS19440 WP_042653391.1 4181456..4182037(+) (ssb) [Aeromonas encheleia strain NCTC12917]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGTGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACTG
AATGGCACCGTGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAAAAAGGCTCCCAGGTCTATGTC
GAAGGCAAACTGCAGACTCGCAAGTGGCAGGATCAGGGGGGTCAGGAGCGTTACACCACCGAAATCCTGGTCGACAGCTT
CAGCGGCGTGATGCAGATGTTGGGTGGCCGTCCGCAAGGCGGCGCCGGTCAGAGCATGGGTGGCCAGCAATCCCAGGGCA
ACTGGGGCCAGTCGCAACAGGCCGCTCCTCAGCAGAACATGCCACGCCCCGCGGCCGCACCGCAGCAGAACATGCAGCAG
CAAGGTGGCTACAGCCGTCCTCAGCAACAGCAGCAACCTCAGTCTGCCCCGCCGGTTTACAACGAACCGCCGATGGATTT
CGACGACGACATTCCATTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	66.837	100	0.679
ssb	Glaesserella parasuis strain SC1401	52.736	100	0.549
ssb	Neisseria gonorrhoeae MS11	46.316	98.446	0.456
ssb	Neisseria meningitidis MC58	45.789	98.446	0.451