Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EL199_RS04840 Genome accession   NZ_LR134365
Coordinates   1001695..1002072 (+) Length   125 a.a.
NCBI ID   WP_004139288.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain NCTC10426     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 996695..1007072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL199_RS04820 (NCTC10426_00932) - 996735..998216 (+) 1482 WP_004139278.1 Ppx/GppA phosphatase family protein -
  EL199_RS04825 (NCTC10426_00933) lpdA 998277..1000067 (-) 1791 WP_126316011.1 dihydrolipoyl dehydrogenase -
  EL199_RS04830 (NCTC10426_00934) trxB 1000119..1001069 (-) 951 WP_040354427.1 thioredoxin-disulfide reductase -
  EL199_RS04835 (NCTC10426_00935) ruvX 1001217..1001621 (+) 405 WP_004139286.1 Holliday junction resolvase RuvX -
  EL199_RS04840 (NCTC10426_00936) pilG 1001695..1002072 (+) 378 WP_004139288.1 PleD family two-component system response regulator Regulator
  EL199_RS04845 (NCTC10426_00937) - 1002088..1002447 (+) 360 WP_004139290.1 response regulator transcription factor -
  EL199_RS04850 (NCTC10426_00938) - 1002444..1002980 (+) 537 WP_004139292.1 chemotaxis protein CheW -
  EL199_RS04855 (NCTC10426_00939) - 1002994..1004256 (+) 1263 WP_040354430.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13803.06 Da        Isoelectric Point: 9.4688

>NTDB_id=1122316 EL199_RS04840 WP_004139288.1 1001695..1002072(+) (pilG) [Cardiobacterium hominis strain NCTC10426]
MSDKKSVKVLVVDDSGTIRKTAEAILTKEGYTVATAEDGFSALSKVMSFKPDLIFLDIMMPRLDGYQVCSVIKSNAAFAK
TPVLMLSSKDSIFDKARGRIAGSEYFMTKPFSRDELLNAIRTHVQ

Nucleotide


Download         Length: 378 bp        

>NTDB_id=1122316 EL199_RS04840 WP_004139288.1 1001695..1002072(+) (pilG) [Cardiobacterium hominis strain NCTC10426]
GTGTCTGATAAAAAATCCGTGAAAGTGCTCGTAGTGGACGATAGCGGCACGATCCGGAAAACCGCCGAGGCCATCCTCAC
AAAAGAAGGCTACACCGTGGCCACCGCTGAAGACGGCTTCAGCGCTTTGTCCAAAGTCATGTCGTTCAAACCCGACCTCA
TCTTCCTCGACATCATGATGCCGCGGCTTGATGGCTATCAGGTCTGCTCCGTCATCAAGAGCAACGCCGCCTTTGCCAAA
ACGCCGGTGCTGATGCTTTCCAGTAAAGACAGCATCTTCGACAAGGCGCGCGGTCGTATTGCCGGGTCTGAATACTTCAT
GACCAAACCCTTTTCGCGTGACGAATTGCTCAATGCCATCCGCACGCACGTACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

60

96

0.576
  vicR Streptococcus mutans UA159

44.915

94.4

0.424
  pilH Synechocystis sp. PCC 6803

43.363

90.4

0.392
  micA Streptococcus pneumoniae Cp1015

44.037

87.2

0.384

Multiple sequence alignment