Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL160_RS00330 | Genome accession | NZ_LR134351 |
| Coordinates | 59859..60362 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain NCTC13811 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 55799..79482 | 59859..60362 | within | 0 |
Gene organization within MGE regions
Location: 55799..79482
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL160_RS00295 (NCTC13811_00061) | - | 55799..56644 (+) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
| EL160_RS00300 (NCTC13811_00062) | - | 56798..57679 (+) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| EL160_RS00305 (NCTC13811_00063) | - | 57709..57912 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| EL160_RS00310 (NCTC13811_00064) | ychF | 57924..59021 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| EL160_RS00315 (NCTC13811_00065) | - | 59107..59298 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| EL160_RS00325 (NCTC13811_00066) | rpsF | 59542..59838 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| EL160_RS00330 (NCTC13811_00067) | ssbA | 59859..60362 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| EL160_RS00335 (NCTC13811_00068) | rpsR | 60414..60656 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| EL160_RS00340 (NCTC13811_00069) | - | 60888..61607 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| EL160_RS00345 (NCTC13811_00070) | - | 61720..62934 (-) | 1215 | WP_000270135.1 | tyrosine-type recombinase/integrase | - |
| EL160_RS00350 (NCTC13811_00071) | - | 63095..63718 (-) | 624 | WP_000230361.1 | helix-turn-helix domain-containing protein | - |
| EL160_RS00355 (NCTC13811_00072) | - | 63867..64031 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| EL160_RS00360 (NCTC13811_00073) | - | 64032..64304 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| EL160_RS00365 (NCTC13811_00074) | - | 64316..64489 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| EL160_RS00370 (NCTC13811_00075) | - | 64456..64659 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| EL160_RS00375 (NCTC13811_00076) | - | 64661..65044 (+) | 384 | WP_000403837.1 | hypothetical protein | - |
| EL160_RS00380 (NCTC13811_00077) | tscT | 65045..65371 (+) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| EL160_RS00385 (NCTC13811_00078) | - | 65436..66305 (+) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| EL160_RS00390 (NCTC13811_00079) | - | 66319..68029 (+) | 1711 | Protein_73 | DUF927 domain-containing protein | - |
| EL160_RS00395 (NCTC13811_00080) | - | 68339..68719 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| EL160_RS00400 (NCTC13811_00081) | - | 68716..69357 (+) | 642 | WP_001656918.1 | hypothetical protein | - |
| EL160_RS00405 (NCTC13811_00082) | - | 70065..70409 (+) | 345 | WP_001288442.1 | hypothetical protein | - |
| EL160_RS00410 (NCTC13811_00083) | - | 70440..71093 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| EL160_RS00415 (NCTC13811_00084) | - | 71146..71673 (+) | 528 | WP_000771361.1 | spore coat protein | - |
| EL160_RS00420 | - | 71805..72017 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| EL160_RS00425 (NCTC13811_00086) | - | 72014..72583 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| EL160_RS00435 (NCTC13811_00087) | - | 72860..73828 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| EL160_RS00440 (NCTC13811_00088) | - | 73970..74407 (+) | 438 | WP_073392942.1 | DUF3102 domain-containing protein | - |
| EL160_RS00445 (NCTC13811_00089) | - | 74525..75037 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| EL160_RS15610 | - | 75053..75232 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| EL160_RS00455 (NCTC13811_00090) | - | 75996..77003 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| EL160_RS00460 | - | 77009..77723 (-) | 715 | Protein_86 | tyrosine-type recombinase/integrase | - |
| EL160_RS00465 (NCTC13811_00092) | - | 77960..78328 (+) | 369 | WP_000849155.1 | YxeA family protein | - |
| EL160_RS00470 (NCTC13811_00093) | - | 78509..79081 (+) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| EL160_RS00475 (NCTC13811_00094) | - | 79219..79482 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1122121 EL160_RS00330 WP_000934799.1 59859..60362(+) (ssbA) [Staphylococcus aureus strain NCTC13811]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1122121 EL160_RS00330 WP_000934799.1 59859..60362(+) (ssbA) [Staphylococcus aureus strain NCTC13811]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |