Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL332_RS15240 Genome accession   NZ_LR134334
Coordinates   3466437..3466949 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain NCTC7357     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3461437..3471949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL332_RS15225 (NCTC7357_03047) purD 3462282..3463532 (+) 1251 WP_124325620.1 phosphoribosylamine--glycine ligase -
  EL332_RS15230 (NCTC7357_03048) - 3463582..3464976 (+) 1395 WP_164486056.1 MFS transporter -
  EL332_RS15235 (NCTC7357_03049) - 3464973..3466364 (+) 1392 WP_124325622.1 amidase -
  EL332_RS15240 (NCTC7357_03050) ssb 3466437..3466949 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  EL332_RS15245 (NCTC7357_03051) - 3466959..3468353 (-) 1395 WP_106698751.1 MFS transporter -
  EL332_RS15250 (NCTC7357_03052) uvrA 3468534..3471368 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  EL332_RS15255 (NCTC7357_03053) bfr 3471462..3471926 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=1121773 EL332_RS15240 WP_009045846.1 3466437..3466949(-) (ssb) [Pseudomonas chlororaphis strain NCTC7357]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1121773 EL332_RS15240 WP_009045846.1 3466437..3466949(-) (ssb) [Pseudomonas chlororaphis strain NCTC7357]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCACAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment