Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   EL130_RS04865 Genome accession   NZ_LR134320
Coordinates   950858..953092 (+) Length   744 a.a.
NCBI ID   WP_002296251.1    Uniprot ID   A0A829BVF3
Organism   Streptococcus mutans strain NCTC10832     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 926333..993865 950858..953092 within 0
IScluster/Tn 954027..955432 950858..953092 flank 935


Gene organization within MGE regions


Location: 926333..993865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS04775 (NCTC10832_00912) recR 926379..926978 (+) 600 WP_002264648.1 recombination mediator RecR -
  EL130_RS04780 (NCTC10832_00913) - 927190..928239 (+) 1050 WP_002272953.1 D-alanine--D-alanine ligase -
  EL130_RS04785 (NCTC10832_00914) - 928411..928971 (-) 561 WP_002263248.1 folate family ECF transporter S component -
  EL130_RS04790 (NCTC10832_00916) - 929324..930274 (+) 951 WP_002264646.1 bile acid:sodium symporter family protein -
  EL130_RS04795 (NCTC10832_00917) - 930352..931710 (+) 1359 WP_002283842.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  EL130_RS04800 (NCTC10832_00918) - 931822..932505 (+) 684 WP_002283843.1 TIGR02206 family membrane protein -
  EL130_RS04805 (NCTC10832_00920) - 932586..933937 (+) 1352 WP_390897834.1 IS3 family transposase -
  EL130_RS04810 (NCTC10832_00921) - 934128..935672 (+) 1545 WP_002275051.1 peptide chain release factor 3 -
  EL130_RS04815 (NCTC10832_00922) - 935926..937761 (+) 1836 WP_002311536.1 SH3 domain-containing protein -
  EL130_RS04820 (NCTC10832_00923) spaP 937999..942699 (+) 4701 WP_012997877.1 cell surface antigen I/II -
  EL130_RS04825 (NCTC10832_00924) - 942989..944542 (+) 1554 WP_002296530.1 DEAD/DEAH box helicase -
  EL130_RS04830 (NCTC10832_00925) - 945064..945312 (+) 249 WP_002263747.1 hypothetical protein -
  EL130_RS04835 (NCTC10832_00926) - 945356..945715 (+) 360 WP_002263746.1 hypothetical protein -
  EL130_RS04840 (NCTC10832_00927) - 946552..947571 (-) 1020 WP_002280666.1 GIY-YIG nuclease family protein -
  EL130_RS04845 (NCTC10832_00928) - 947617..948129 (-) 513 WP_002265382.1 HXXEE domain-containing protein -
  EL130_RS04850 (NCTC10832_00929) - 948218..949153 (-) 936 WP_126475449.1 polysaccharide deacetylase family protein -
  EL130_RS04855 (NCTC10832_00930) - 949292..950044 (+) 753 WP_002264733.1 lysophospholipid acyltransferase family protein -
  EL130_RS04860 (NCTC10832_00931) - 950188..950868 (+) 681 WP_002267104.1 helix-hairpin-helix domain-containing protein -
  EL130_RS04865 (NCTC10832_00932) comEC/celB 950858..953092 (+) 2235 WP_002296251.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL130_RS04870 (NCTC10832_00933) - 953278..953904 (+) 627 WP_002264731.1 DUF805 domain-containing protein -
  EL130_RS04875 - 954084..955432 (+) 1349 WP_086956939.1 IS3-like element ISSmu1 family transposase -
  EL130_RS04880 (NCTC10832_00936) holA 955511..956551 (+) 1041 WP_002276529.1 DNA polymerase III subunit delta -
  EL130_RS04885 (NCTC10832_00937) sodA 956698..957309 (+) 612 WP_002261912.1 superoxide dismutase SodA -
  EL130_RS04890 (NCTC10832_00938) - 957862..958926 (+) 1065 WP_014678131.1 serine hydrolase -
  EL130_RS04895 (NCTC10832_00939) - 959092..959850 (+) 759 WP_002270600.1 YhfC family intramembrane metalloprotease -
  EL130_RS04900 (NCTC10832_00940) - 959919..960383 (+) 465 WP_002261909.1 MarR family transcriptional regulator -
  EL130_RS04905 (NCTC10832_00941) - 960430..961659 (+) 1230 WP_002283426.1 acyl-CoA thioesterase/bile acid-CoA:amino acid N-acyltransferase family protein -
  EL130_RS04910 (NCTC10832_00942) queA 961845..962873 (-) 1029 WP_002261907.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EL130_RS04915 (NCTC10832_00943) - 963011..963730 (+) 720 WP_002261906.1 VIT family protein -
  EL130_RS04920 (NCTC10832_00944) nagB 963861..964562 (+) 702 WP_002283427.1 glucosamine-6-phosphate deaminase NagB -
  EL130_RS10420 (NCTC10832_00945) - 964792..965430 (-) 639 Protein_889 glutathione S-transferase C-terminal domain-containing protein -
  EL130_RS04930 (NCTC10832_00946) - 965576..966292 (+) 717 WP_002283428.1 pseudouridine synthase -
  EL130_RS04935 (NCTC10832_00947) - 966307..966807 (+) 501 WP_002283429.1 GNAT family N-acetyltransferase -
  EL130_RS04940 (NCTC10832_00948) - 966897..968270 (-) 1374 WP_002283430.1 PLP-dependent aminotransferase family protein -
  EL130_RS04945 (NCTC10832_00949) - 968398..969366 (+) 969 WP_002283431.1 alcohol dehydrogenase catalytic domain-containing protein -
  EL130_RS10315 - 969611..969884 (+) 274 Protein_894 hypothetical protein -
  EL130_RS04955 (NCTC10832_00950) - 969990..970883 (+) 894 WP_002261898.1 alpha/beta hydrolase -
  EL130_RS04960 (NCTC10832_00951) - 971190..972128 (+) 939 WP_002283433.1 competence protein CoiA -
  EL130_RS04965 (NCTC10832_00952) pepF 972150..973949 (+) 1800 WP_002283434.1 oligoendopeptidase F Regulator
  EL130_RS04970 (NCTC10832_00953) - 974166..974783 (+) 618 WP_002283435.1 HAD-IA family hydrolase -
  EL130_RS04975 (NCTC10832_00954) - 974833..975540 (+) 708 WP_002275166.1 O-methyltransferase -
  EL130_RS04980 (NCTC10832_00955) prsA 975602..976603 (+) 1002 WP_002272059.1 peptidylprolyl isomerase PrsA -
  EL130_RS04985 (NCTC10832_00957) - 976842..977342 (+) 501 WP_002265403.1 LURP-one-related/scramblase family protein -
  EL130_RS04990 (NCTC10832_00958) alaS 977557..980175 (+) 2619 WP_002278222.1 alanine--tRNA ligase -
  EL130_RS04995 (NCTC10832_00959) - 980387..981415 (-) 1029 WP_002272594.1 ABC transporter substrate-binding protein -
  EL130_RS05000 (NCTC10832_00960) - 981435..982184 (-) 750 WP_002278223.1 ABC transporter ATP-binding protein -
  EL130_RS05005 (NCTC10832_00961) - 982178..983164 (-) 987 WP_019320485.1 ABC transporter permease -
  EL130_RS05010 (NCTC10832_00962) - 983374..984075 (+) 702 WP_002308326.1 lantibiotic protection ABC transporter ATP-binding protein -
  EL130_RS05015 (NCTC10832_00963) - 984077..984826 (+) 750 WP_002269725.1 lantibiotic immunity ABC transporter MutE/EpiE family permease subunit -
  EL130_RS05020 (NCTC10832_00964) - 984826..985572 (+) 747 WP_002283438.1 lantibiotic immunity ABC transporter MutG family permease subunit -
  EL130_RS05025 (NCTC10832_00965) - 985948..986787 (+) 840 WP_002264198.1 TraX family protein -
  EL130_RS05030 (NCTC10832_00966) - 986833..987492 (+) 660 WP_002278227.1 response regulator transcription factor -
  EL130_RS05035 (NCTC10832_00967) - 987483..988865 (+) 1383 WP_002283439.1 sensor histidine kinase -
  EL130_RS05040 (NCTC10832_00968) - 989170..989415 (+) 246 WP_002271030.1 helix-turn-helix transcriptional regulator -
  EL130_RS05045 (NCTC10832_00969) - 989560..990249 (+) 690 WP_002277927.1 CPBP family intramembrane glutamic endopeptidase -
  EL130_RS05050 (NCTC10832_00970) argC 990384..991406 (+) 1023 WP_002277926.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  EL130_RS05055 (NCTC10832_00971) argJ 991565..992758 (+) 1194 WP_126475450.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase -
  EL130_RS05060 (NCTC10832_00972) argB 992787..993524 (+) 738 WP_002277924.1 acetylglutamate kinase -

Sequence


Protein


Download         Length: 744 a.a.        Molecular weight: 85560.01 Da        Isoelectric Point: 10.0891

>NTDB_id=1121427 EL130_RS04865 WP_002296251.1 950858..953092(+) (comEC/celB) [Streptococcus mutans strain NCTC10832]
MLIRFFPLKPIYLAFLTVLLYFCIHCFSFLPVGLFILALVFLVFQYDRQICIKTLLFLLPFAAFFFYFHQKRQSEYQIVP
RQVQKLIIIPDTLSINGDNLSFRAKSGHWTYQVFYKLKSETEKHYFEQLWQTAEIQVTADVVEAEEQRNFKGFDYRNYLK
MQGIYRIVNVTDIKTIKLSSKRFWFARLHEWRRRALVSIQSKFPDPMKHYMTGLLFGYLDKSFDEMNAIYSSLGIIHLFA
LSGMQVSFFIGKFRYLGLRLGIRQEYMNAIQLPFSLLYAGLTGFAVSVVRSLIQSNLTHFGFKKQDNFALTLFVMFFLIP
NFLLTTGGVLSFAYAFILIMIDFETLSLLKRILFQTFSLSLGILPLLMWYFSSFQPLSILLTILFSFIFDNLMLPFLTLA
YFLSPFVSLACFNPAFRLLERIIVQIHLIFSRPFILGSPTLPILLLLLCLLALLYDFRQKKRVVLVLSSILALLFFISKN
PLTNEVTIVDIGQGDSILLRDISSKTILIDVGGKVTFGQTDKWRRRISDANAEKTLIPYLKSRGIDKIDQLVLTHTDTDH
MGDMEVVAKAFHVGEVLVSPGSLTKANFVSKLRRMKVKVHITKPGETLSIMGSHLQVLYPLKIGDGGNNDSIVLYGRLLG
LNFLFTGDLEKEGEAELLKTYPNLKVDVLKAGHHGSKGSSSPELLAQIEPKIALISAGKNNRYKHPHQETLDRFAQIKSR
IYRTDQEGAIRFKGLKHWQIETVR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=1121427 EL130_RS04865 WP_002296251.1 950858..953092(+) (comEC/celB) [Streptococcus mutans strain NCTC10832]
GTGTTGATTAGGTTTTTTCCTCTCAAACCAATCTATTTAGCCTTTTTAACTGTTTTGCTTTATTTTTGTATTCACTGCTT
TTCTTTTTTGCCAGTTGGCTTATTTATTTTAGCTTTAGTCTTTCTTGTTTTTCAATATGATAGGCAAATCTGTATCAAAA
CACTTTTGTTTTTATTGCCTTTTGCCGCTTTCTTTTTCTATTTTCACCAAAAAAGGCAAAGCGAGTATCAAATAGTACCC
AGACAGGTTCAAAAGTTAATTATCATTCCAGATACGCTTAGTATCAATGGAGATAACTTAAGTTTTCGAGCAAAATCAGG
TCATTGGACTTATCAGGTCTTTTATAAATTAAAATCTGAAACAGAGAAACATTATTTTGAACAATTATGGCAGACAGCAG
AAATTCAAGTGACAGCAGATGTTGTAGAAGCAGAAGAGCAGCGTAATTTCAAGGGATTCGATTATAGAAACTATTTAAAG
ATGCAGGGAATTTACCGAATTGTTAATGTCACAGACATTAAAACAATTAAACTGAGTTCTAAACGCTTCTGGTTTGCTCG
TTTGCATGAATGGCGACGAAGAGCTTTGGTATCTATTCAGTCAAAATTTCCAGACCCCATGAAACACTATATGACTGGTC
TGCTTTTTGGCTATTTAGATAAATCCTTTGATGAAATGAATGCTATTTATTCTAGCTTAGGTATTATTCACCTTTTTGCT
TTGTCAGGTATGCAGGTTAGTTTTTTCATTGGGAAATTTCGTTATTTGGGCTTGCGTTTAGGTATTAGACAGGAATACAT
GAATGCTATTCAGCTACCCTTTTCTTTGCTTTATGCTGGTTTGACTGGCTTTGCAGTATCCGTTGTGCGTAGTTTGATTC
AAAGTAATCTTACTCATTTTGGTTTTAAAAAGCAGGATAACTTTGCTCTAACCTTATTTGTTATGTTTTTCCTGATACCC
AATTTCTTATTAACAACAGGAGGTGTGCTTAGTTTTGCCTATGCTTTTATTCTAATCATGATTGATTTTGAGACTTTGTC
ACTCTTAAAGCGGATTCTATTTCAAACCTTTTCTCTTTCTTTAGGGATTTTACCGTTATTGATGTGGTATTTTAGCAGTT
TTCAGCCCTTGTCTATCCTATTAACTATCCTCTTTTCTTTTATTTTTGATAACTTGATGTTGCCTTTTTTGACACTTGCT
TATTTTCTGTCACCTTTTGTATCACTTGCCTGCTTCAATCCAGCTTTTAGATTATTAGAAAGAATAATTGTTCAAATTCA
CCTAATCTTTAGTCGTCCTTTTATTTTGGGCAGTCCGACTTTGCCTATTCTCTTACTTTTATTGTGCCTTTTAGCTTTAC
TCTATGATTTTCGTCAGAAGAAAAGGGTAGTGTTAGTACTTAGTAGCATTCTCGCCCTGTTATTTTTCATCAGTAAAAAT
CCTTTGACTAATGAAGTGACTATTGTTGATATTGGTCAGGGGGATAGTATTCTTCTTCGGGATATCAGCAGTAAGACTAT
TTTAATTGATGTAGGAGGAAAAGTGACTTTTGGACAGACTGATAAATGGCGGCGGCGTATCAGTGATGCTAATGCTGAAA
AGACTTTGATTCCCTATCTCAAAAGCAGAGGCATTGATAAGATTGACCAATTGGTTTTGACTCATACTGACACGGATCAT
ATGGGAGATATGGAAGTGGTGGCAAAGGCCTTTCATGTTGGGGAAGTTTTAGTTAGTCCAGGCAGTTTAACTAAGGCAAA
TTTTGTCAGTAAATTGAGAAGAATGAAAGTTAAGGTACACATCACTAAGCCAGGGGAGACATTATCCATTATGGGGAGTC
ATTTACAGGTACTCTATCCGTTGAAAATAGGTGATGGTGGTAATAATGACTCTATCGTTCTTTATGGACGTTTGCTAGGC
TTAAATTTTCTCTTTACAGGAGATTTGGAAAAAGAAGGAGAAGCAGAATTGCTAAAGACTTATCCCAATTTAAAAGTTGA
TGTCTTAAAAGCTGGACATCATGGTTCAAAAGGTTCTTCTTCACCTGAATTATTAGCTCAAATAGAGCCTAAAATTGCTC
TTATCTCGGCAGGAAAGAACAATCGTTATAAACATCCCCATCAGGAGACACTGGACAGATTTGCGCAAATAAAAAGTCGG
ATTTATCGGACGGATCAAGAGGGTGCCATTCGTTTTAAGGGTCTTAAGCATTGGCAGATTGAGACTGTGCGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A829BVF3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

51.147

99.597

0.509

  comEC/celB Streptococcus mitis NCTC 12261

51.078

99.731

0.509

  comEC/celB Streptococcus pneumoniae TIGR4

50.672

100

0.507

  comEC/celB Streptococcus pneumoniae Rx1

50

100

0.5

  comEC/celB Streptococcus pneumoniae D39

50

100

0.5

  comEC/celB Streptococcus pneumoniae R6

50

100

0.5

  comEC Lactococcus lactis subsp. cremoris KW2

46.174

100

0.462


Multiple sequence alignment