Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   EL130_RS00920 Genome accession   NZ_LR134320
Coordinates   168570..168863 (-) Length   97 a.a.
NCBI ID   WP_002263439.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163570..173863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS00885 (NCTC10832_00164) - 163594..164256 (-) 663 WP_002263446.1 type II CAAX endopeptidase family protein -
  EL130_RS00890 (NCTC10832_00165) - 164309..164749 (-) 441 WP_002263445.1 hypothetical protein -
  EL130_RS00895 (NCTC10832_00166) - 164718..164963 (-) 246 WP_002278011.1 helix-turn-helix transcriptional regulator -
  EL130_RS00900 (NCTC10832_00167) - 165516..166715 (-) 1200 WP_002265895.1 acetate kinase -
  EL130_RS00905 (NCTC10832_00168) comYH 166774..167727 (-) 954 WP_002278010.1 class I SAM-dependent methyltransferase Machinery gene
  EL130_RS00910 (NCTC10832_00169) comYG 167782..168171 (-) 390 WP_002278009.1 competence type IV pilus minor pilin ComGG Machinery gene
  EL130_RS00915 (NCTC10832_00170) comYF 168149..168583 (-) 435 WP_002264245.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL130_RS00920 (NCTC10832_00171) comYE 168570..168863 (-) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL130_RS00925 (NCTC10832_00172) comYD 168835..169239 (-) 405 WP_002273742.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL130_RS00930 (NCTC10832_00173) comYC 169226..169540 (-) 315 WP_126475429.1 competence type IV pilus major pilin ComGC Machinery gene
  EL130_RS00935 (NCTC10832_00174) comYB 169540..170571 (-) 1032 WP_255262945.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL130_RS00940 (NCTC10832_00175) comYA 170507..171448 (-) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  EL130_RS00945 (NCTC10832_00176) - 171579..171962 (-) 384 WP_002263434.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11001.91 Da        Isoelectric Point: 9.4908

>NTDB_id=1121393 EL130_RS00920 WP_002263439.1 168570..168863(-) (comYE) [Streptococcus mutans strain NCTC10832]
MVSIKKQKVKAYILLESLVALGLFVTITTLILTQLSHYQERTAKNLQKQEILNLAIMALQTQQDHLSFNGVSVTVVKNQG
ETIVYHDHEEVINLVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1121393 EL130_RS00920 WP_002263439.1 168570..168863(-) (comYE) [Streptococcus mutans strain NCTC10832]
GTGGTCAGTATAAAAAAACAGAAAGTTAAAGCTTATATTCTTCTAGAAAGTTTAGTTGCTTTGGGACTTTTCGTAACCAT
CACAACTTTAATTCTTACTCAGTTGAGTCATTATCAGGAAAGAACAGCTAAAAATTTACAAAAACAAGAAATATTGAATT
TAGCAATAATGGCTCTTCAAACTCAGCAAGATCATTTAAGCTTCAACGGCGTCAGTGTTACGGTTGTTAAAAATCAAGGG
GAAACTATAGTTTATCATGATCATGAGGAGGTTATCAATCTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

100

100

1
  comYE Streptococcus mutans UA159

100

100

1
  comGE/cglE Streptococcus pneumoniae Rx1

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae D39

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae R6

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae TIGR4

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis SK321

44.444

92.784

0.412

Multiple sequence alignment