Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL233_RS17110 Genome accession   NZ_LR134319
Coordinates   3655595..3656086 (-) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas stutzeri strain NCTC10450     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3650595..3661086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL233_RS17085 (NCTC10450_03444) - 3650711..3652057 (-) 1347 WP_045633040.1 MotA/TolQ/ExbB proton channel family protein -
  EL233_RS17090 (NCTC10450_03445) - 3652054..3652839 (-) 786 WP_126526895.1 DUF3450 domain-containing protein -
  EL233_RS17095 (NCTC10450_03446) - 3653024..3653707 (+) 684 WP_045633039.1 OmpW/AlkL family protein -
  EL233_RS17100 (NCTC10450_03447) - 3653778..3654707 (-) 930 WP_045633038.1 NAD-dependent epimerase/dehydratase family protein -
  EL233_RS17105 (NCTC10450_03448) - 3654700..3655584 (-) 885 WP_017244908.1 sugar nucleotide-binding protein -
  EL233_RS17110 (NCTC10450_03449) ssb 3655595..3656086 (-) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  EL233_RS17115 (NCTC10450_03450) - 3656258..3657625 (-) 1368 WP_017244909.1 MFS transporter -
  EL233_RS17120 (NCTC10450_03451) uvrA 3657757..3660594 (+) 2838 WP_126526896.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=1121366 EL233_RS17110 WP_003281797.1 3655595..3656086(-) (ssb) [Stutzerimonas stutzeri strain NCTC10450]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1121366 EL233_RS17110 WP_003281797.1 3655595..3656086(-) (ssb) [Stutzerimonas stutzeri strain NCTC10450]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503

Multiple sequence alignment