Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | EL257_RS22970 | Genome accession | NZ_LR134318 |
| Coordinates | 5050797..5051669 (+) | Length | 290 a.a. |
| NCBI ID | WP_126366475.1 | Uniprot ID | A0A448E1N1 |
| Organism | Pseudomonas fluorescens strain NCTC9428 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5045797..5056669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL257_RS22945 (NCTC9428_04577) | - | 5046021..5046320 (+) | 300 | WP_126366465.1 | DUF2845 domain-containing protein | - |
| EL257_RS22950 (NCTC9428_04578) | - | 5046583..5046936 (-) | 354 | WP_126366467.1 | BON domain-containing protein | - |
| EL257_RS22955 (NCTC9428_04579) | - | 5047233..5047649 (-) | 417 | WP_126366469.1 | pilin | - |
| EL257_RS22960 (NCTC9428_04580) | pilB | 5047875..5049575 (+) | 1701 | WP_126366471.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EL257_RS22965 (NCTC9428_04581) | pilC | 5049578..5050795 (+) | 1218 | WP_126366473.1 | type II secretion system F family protein | Machinery gene |
| EL257_RS22970 (NCTC9428_04582) | pilD | 5050797..5051669 (+) | 873 | WP_126366475.1 | prepilin peptidase | Machinery gene |
| EL257_RS22975 (NCTC9428_04583) | coaE | 5051666..5052289 (+) | 624 | WP_126366477.1 | dephospho-CoA kinase | - |
| EL257_RS22980 (NCTC9428_04584) | yacG | 5052286..5052486 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| EL257_RS22985 (NCTC9428_04585) | - | 5052519..5053208 (-) | 690 | WP_126366479.1 | energy-coupling factor ABC transporter permease | - |
| EL257_RS22995 (NCTC9428_04586) | - | 5053397..5054023 (+) | 627 | WP_126366481.1 | DUF1780 domain-containing protein | - |
| EL257_RS23000 (NCTC9428_04587) | - | 5054020..5054547 (+) | 528 | WP_126366483.1 | MOSC domain-containing protein | - |
| EL257_RS23005 (NCTC9428_04588) | - | 5054599..5054772 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| EL257_RS23010 (NCTC9428_04589) | - | 5054836..5056134 (+) | 1299 | WP_100847187.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32463.79 Da Isoelectric Point: 7.3241
>NTDB_id=1121329 EL257_RS22970 WP_126366475.1 5050797..5051669(+) (pilD) [Pseudomonas fluorescens strain NCTC9428]
MPIDELFAIYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQARDVLGLPVETPQPTYNLLLPHSQCPHCEYRIR
PWENIPLLSYLWLGGRCSACQAPISKRYPLTELACGLLSAFIAWHLGVGWPACMLILLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGAVAGYMALWTVFWLFKVLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVIGVIVLRLRRQETSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPIDELFAIYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQARDVLGLPVETPQPTYNLLLPHSQCPHCEYRIR
PWENIPLLSYLWLGGRCSACQAPISKRYPLTELACGLLSAFIAWHLGVGWPACMLILLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGAVAGYMALWTVFWLFKVLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVIGVIVLRLRRQETSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=1121329 EL257_RS22970 WP_126366475.1 5050797..5051669(+) (pilD) [Pseudomonas fluorescens strain NCTC9428]
ATGCCTATCGACGAACTGTTTGCGATCTATCCGCTGGCCTTCGTTTTCACCGCGCTGTTACTGGGTCTGGTGGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGCTTGCCGAAAATGCTCGAACGCGATTGGCGTCAGCAAGCGCGCGATGTTCTTGGCC
TGCCCGTCGAAACACCGCAACCGACGTACAATCTGCTGCTGCCGCACTCCCAGTGTCCGCACTGTGAATACCGGATTCGT
CCGTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTGGGTGGGCGCTGCTCAGCGTGCCAGGCGCCGATCAGCAAACG
TTATCCACTGACTGAACTGGCGTGCGGGTTGCTCTCGGCCTTCATTGCCTGGCACTTGGGTGTCGGCTGGCCCGCCTGCA
TGCTGATCTTGCTGACGTGGGGCTTGCTCGCAATGAGCCTGATCGACACCGAGCATCAGTTGCTGCCCGACGTCCTGGTG
CTGCCCTTGTTGTGGCTGGGACTGATCGTCAACAGCTTCGGGTTGTTCGTGCCCTTGCACGATGCACTCTGGGGCGCGGT
CGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGCTGTTCAAAGTGCTCACTGGCAAGGACGGCATCGGGCACGGCGACT
TCAAGCTGTTGGCGCTGCTCGGCGCGTGGGGCGGTTGGCAGATTCTGCCGCTGACCATTCTGCTTTCGTCATTGGTGGGG
GCGGTCATCGGCGTGATTGTCCTGCGTTTGCGCAGACAGGAAACCTCGACGCCAATCCCTTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCGATCTATCCGCTGGCCTTCGTTTTCACCGCGCTGTTACTGGGTCTGGTGGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGCTTGCCGAAAATGCTCGAACGCGATTGGCGTCAGCAAGCGCGCGATGTTCTTGGCC
TGCCCGTCGAAACACCGCAACCGACGTACAATCTGCTGCTGCCGCACTCCCAGTGTCCGCACTGTGAATACCGGATTCGT
CCGTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTGGGTGGGCGCTGCTCAGCGTGCCAGGCGCCGATCAGCAAACG
TTATCCACTGACTGAACTGGCGTGCGGGTTGCTCTCGGCCTTCATTGCCTGGCACTTGGGTGTCGGCTGGCCCGCCTGCA
TGCTGATCTTGCTGACGTGGGGCTTGCTCGCAATGAGCCTGATCGACACCGAGCATCAGTTGCTGCCCGACGTCCTGGTG
CTGCCCTTGTTGTGGCTGGGACTGATCGTCAACAGCTTCGGGTTGTTCGTGCCCTTGCACGATGCACTCTGGGGCGCGGT
CGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGCTGTTCAAAGTGCTCACTGGCAAGGACGGCATCGGGCACGGCGACT
TCAAGCTGTTGGCGCTGCTCGGCGCGTGGGGCGGTTGGCAGATTCTGCCGCTGACCATTCTGCTTTCGTCATTGGTGGGG
GCGGTCATCGGCGTGATTGTCCTGCGTTTGCGCAGACAGGAAACCTCGACGCCAATCCCTTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.837 |
97.241 |
0.514 |
| pilD | Vibrio campbellii strain DS40M4 |
51.064 |
97.241 |
0.497 |
| pilD | Acinetobacter baumannii D1279779 |
47.81 |
94.483 |
0.452 |
| pilD | Acinetobacter nosocomialis M2 |
47.81 |
94.483 |
0.452 |
| pilD | Neisseria gonorrhoeae MS11 |
47.778 |
93.103 |
0.445 |