Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   VV93_RS10090 Genome accession   NZ_CP009261
Coordinates   2178258..2179262 (-) Length   334 a.a.
NCBI ID   WP_011150787.1    Uniprot ID   Q7MJ78
Organism   Vibrio vulnificus strain 93U204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2173258..2184262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS10060 (VV93_v1c19880) tolQ 2173404..2174087 (-) 684 WP_011080044.1 protein TolQ -
  VV93_RS10065 (VV93_v1c19890) ybgC 2174077..2174496 (-) 420 WP_011080043.1 tol-pal system-associated acyl-CoA thioesterase -
  VV93_RS10070 (VV93_v1c19900) ybgE 2174641..2174943 (-) 303 WP_017421971.1 cyd operon protein YbgE -
  VV93_RS23630 (VV93_v1c19910) cydX 2174936..2175043 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  VV93_RS10080 (VV93_v1c19920) cydB 2175056..2176192 (-) 1137 WP_011150786.1 cytochrome d ubiquinol oxidase subunit II -
  VV93_RS10085 (VV93_v1c19930) cydA 2176209..2177795 (-) 1587 WP_013571418.1 cytochrome ubiquinol oxidase subunit I -
  VV93_RS10090 (VV93_v1c19940) ruvB 2178258..2179262 (-) 1005 WP_011150787.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VV93_RS10095 (VV93_v1c19950) ruvA 2179284..2179898 (-) 615 WP_011080038.1 Holliday junction branch migration protein RuvA -
  VV93_RS10100 (VV93_v1c19960) - 2179969..2181429 (-) 1461 WP_039554226.1 methyl-accepting chemotaxis protein -
  VV93_RS10105 (VV93_v1c19970) ruvC 2181544..2182065 (-) 522 WP_011150789.1 crossover junction endodeoxyribonuclease RuvC -
  VV93_RS10110 (VV93_v1c19980) aspS 2182132..2183910 (-) 1779 WP_039554227.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37140.58 Da        Isoelectric Point: 4.8170

>NTDB_id=112128 VV93_RS10090 WP_011150787.1 2178258..2179262(-) (ruvB) [Vibrio vulnificus strain 93U204]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKG
NGHICADTADKALNMLDVDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=112128 VV93_RS10090 WP_011150787.1 2178258..2179262(-) (ruvB) [Vibrio vulnificus strain 93U204]
ATGATTGAAGCAGATCGCTTAATTGCTCCGGAAAATCCCGCCTTTCGTGATGAAGATGTGATTGACCGTGCGATACGACC
AAAGAAACTGGCTGATTACCAAGGCCAAGATCACGTACGTGATCAAATGGAAATTTTTATTAAAGCCGCGCAACTGCGTA
ACGAAGCGCTCGACCATTTATTGATTTTTGGCCCTCCAGGTTTGGGTAAAACCACCTTAGCGAACATTGTTGCAAACGAG
ATGGGCGTAAATATTCGCACCACGTCAGGCCCGGTGTTAGAAAAAGCGGGGGATTTAGCGGCCTTGCTGACCAATCTTGA
AGAAAACGACGTGCTCTTCATTGATGAGATACACCGACTCAGCCCGATGGTGGAAGAAGTGCTGTATCCAGCCATGGAAG
ATTACCAATTGGATATTATGATTGGTGAAGGCCCTGCTGCACGTTCAATCAAAATCGATTTGCCGCCCTTTACGCTAATT
GGTGCAACCACTCGTGCCGGCTCACTGACTTCCCCTTTGCGTGATCGTTTTGGTATTACCCAGCGTTTGGAGTATTACAA
AATTCCTGATCTGCAGAATATCGTGCAACGCAGTGCTGACTGCTTGGGGCTTTCCATGGAAGCGGAAGGGGCATTAGAGG
TGGCGCGTCGTGCGCGTGGTACACCACGTATTGCCAATCGCTTGTTGCGCCGCGTACGCGATTTTGCTGAAGTAAAAGGC
AATGGTCACATCTGTGCAGACACCGCAGACAAAGCGCTCAACATGCTCGATGTGGACTCGAAAGGTTTTGATTACATGGA
CCGCAAGTTGCTGTTGGCCATCATGGAGAAATTTGGTGGTGGTCCGGTAGGCTTGGATAACATGGCAGCCGCGATCGGTG
AAGAGAAAGACACGATTGAAGATGTGTTAGAGCCATATTTGATTCAGCAGGGTTATTTACAACGCACGCCTCGAGGGCGA
ATCGCAACCGATCGGGCGTATCTTCATTTCGGAATTGAAAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MJ78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.094

98.503

0.602
  ruvB Streptococcus pneumoniae TIGR4

59.443

96.707

0.575
  ruvB Streptococcus pneumoniae R6

59.443

96.707

0.575
  ruvB Streptococcus pneumoniae D39

59.443

96.707

0.575
  ruvB Synechocystis sp. PCC 6803

55.016

92.515

0.509
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494

Multiple sequence alignment