Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   EL136_RS04065 Genome accession   NZ_LR134317
Coordinates   849107..850417 (-) Length   436 a.a.
NCBI ID   WP_154803869.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 844107..855417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS04030 (NCTC6180_00828) coaA 844346..845266 (+) 921 WP_154803865.1 type I pantothenate kinase -
  EL136_RS04035 (NCTC6180_00829) rpsT 845320..845568 (+) 249 WP_012678006.1 30S ribosomal protein S20 -
  EL136_RS04040 (NCTC6180_00830) - 845779..846063 (-) 285 WP_012677440.1 hypothetical protein -
  EL136_RS04045 (NCTC6180_00831) - 846079..846471 (-) 393 WP_154803866.1 hypothetical protein -
  EL136_RS04050 (NCTC6180_00832) - 846468..847661 (-) 1194 WP_154803867.1 hypothetical protein -
  EL136_RS04055 (NCTC6180_00833) - 847672..848055 (-) 384 WP_154803576.1 DUF1433 domain-containing protein -
  EL136_RS04060 (NCTC6180_00834) - 848282..848698 (-) 417 WP_154803868.1 hypothetical protein -
  EL136_RS04065 (NCTC6180_00835) ciaH 849107..850417 (-) 1311 WP_154803869.1 sensor histidine kinase Regulator
  EL136_RS04070 (NCTC6180_00836) ciaR 850410..851084 (-) 675 WP_021320708.1 response regulator transcription factor Regulator
  EL136_RS04075 (NCTC6180_00837) - 851511..854048 (-) 2538 WP_154803870.1 M1 family metallopeptidase -
  EL136_RS04080 (NCTC6180_00838) phoU 854282..854935 (-) 654 WP_012678018.1 phosphate signaling complex protein PhoU -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49636.30 Da        Isoelectric Point: 9.6507

>NTDB_id=1121269 EL136_RS04065 WP_154803869.1 849107..850417(-) (ciaH) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MNKLKKGLLSDNYTHFFHFFAIFTGIFVVMTIIILQIMRFSVYSTVDSSLISVGQNASNYANRTMARISSFYFDAENNLI
QALPELEASKSLGSSTTNMDIILFSANGTILNSFDAFSNYQSFRLDKSQLNNIVTTQLMNFYGQKEKYHTLTVKVHIKNY
PAVAYMMAVVNVQQLDTANERYEQIIIMVMIVFWLISILASIYLAKWSRKPIMESYAKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILDNSEHIASSLDEVRNMRILTTNLLNLARRDDGIKPQLVDVDAAFFDTVFENYQLVAEESGKQFISAN
QINRPLKTDKALLKQLMTILFDNAIKYTDHNGMVEVKVRTTDKHLLISVIDNGPGIKDDDKKKIFDRFYRVDKARTRQKG
GFGLGLALAQQIVTSLKGTITVSDNKPTGTIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=1121269 EL136_RS04065 WP_154803869.1 849107..850417(-) (ciaH) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGAATAAACTAAAAAAAGGATTATTGTCCGATAATTATACGCATTTTTTTCATTTCTTTGCTATTTTTACAGGCATTTT
TGTTGTCATGACCATCATTATTTTACAAATCATGAGGTTTAGTGTTTATTCCACAGTAGACAGCAGTCTCATTTCGGTCG
GTCAAAATGCCAGTAACTATGCCAATAGGACCATGGCGAGAATATCTTCCTTTTATTTTGATGCAGAAAATAACCTTATT
CAGGCTCTTCCTGAATTGGAAGCGTCAAAATCACTTGGCTCCTCCACCACTAATATGGATATTATTTTATTTAGTGCTAA
TGGGACGATATTGAACTCCTTTGACGCTTTCTCTAATTACCAAAGCTTTCGTTTAGACAAAAGCCAGCTCAATAACATTG
TCACCACACAGCTGATGAATTTTTATGGGCAAAAGGAGAAATACCATACCCTAACCGTTAAGGTTCACATCAAAAACTAT
CCAGCAGTGGCTTATATGATGGCAGTGGTTAATGTTCAGCAGCTGGATACTGCTAATGAGCGCTATGAACAGATTATTAT
CATGGTTATGATTGTCTTTTGGTTAATTTCGATTTTGGCCAGTATTTATTTGGCTAAGTGGAGCAGAAAGCCAATTATGG
AGAGCTATGCCAAGCAAAAAATGTTTGTAGAAAATGCCAGTCATGAGCTTAGGACTCCTTTAGCGGTGCTGCAAAATCGT
TTGGAATCGCTGTTTAGAAAGCCTAACGAAACCATTTTAGACAATAGCGAGCATATTGCGTCAAGCCTAGATGAGGTTCG
TAATATGAGAATATTAACCACTAATTTGTTAAACCTAGCGAGACGTGATGATGGGATCAAGCCGCAGCTGGTTGATGTTG
ATGCAGCATTTTTTGACACTGTTTTTGAAAATTATCAATTAGTTGCAGAAGAATCAGGCAAGCAGTTTATCTCAGCTAAT
CAGATCAATAGGCCCTTAAAGACGGATAAGGCTTTACTCAAGCAGCTGATGACCATTTTGTTTGATAATGCGATCAAATA
CACTGACCATAACGGTATGGTTGAGGTCAAGGTTAGAACGACTGATAAGCATTTATTGATTTCTGTTATTGATAATGGCC
CAGGGATCAAGGATGATGATAAGAAAAAGATTTTTGATCGCTTTTACCGAGTGGATAAGGCAAGGACACGCCAAAAAGGA
GGCTTTGGACTCGGATTGGCCTTAGCGCAGCAGATCGTTACCTCATTAAAAGGAACGATTACCGTCAGTGATAATAAGCC
TACCGGTACCATATTTGAAGTAAAATTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.895

100

0.58
  ciaH Streptococcus pneumoniae Rx1

51.606

100

0.516
  ciaH Streptococcus pneumoniae D39

51.606

100

0.516
  ciaH Streptococcus pneumoniae R6

51.606

100

0.516
  ciaH Streptococcus pneumoniae TIGR4

51.606

100

0.516

Multiple sequence alignment