Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   EL136_RS01995 Genome accession   NZ_LR134317
Coordinates   410227..410949 (+) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 405227..415949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS01980 (NCTC6180_00407) - 406536..407957 (+) 1422 WP_012679829.1 glycoside hydrolase family 1 protein -
  EL136_RS01985 (NCTC6180_00408) - 408142..408957 (-) 816 WP_043052244.1 TIGR03943 family putative permease subunit -
  EL136_RS01990 (NCTC6180_00409) - 408957..409859 (-) 903 WP_021320980.1 permease -
  EL136_RS10970 (NCTC6180_00410) - 409900..410055 (-) 156 WP_012515968.1 SPJ_0845 family protein -
  EL136_RS01995 (NCTC6180_00411) vicR 410227..410949 (+) 723 WP_012677660.1 response regulator transcription factor Regulator
  EL136_RS02000 (NCTC6180_00412) pnpS 410933..412258 (+) 1326 WP_154803718.1 two-component system histidine kinase PnpS -
  EL136_RS02005 (NCTC6180_00413) - 412417..413289 (+) 873 WP_154803719.1 substrate-binding domain-containing protein -
  EL136_RS02010 (NCTC6180_00414) pstC 413359..414222 (+) 864 WP_154803720.1 phosphate ABC transporter permease subunit PstC -
  EL136_RS02015 (NCTC6180_00415) pstA 414215..415030 (+) 816 WP_154803721.1 phosphate ABC transporter permease PstA -
  EL136_RS02020 (NCTC6180_00416) pstB 415032..415784 (+) 753 WP_043029925.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=1121264 EL136_RS01995 WP_012677660.1 410227..410949(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1121264 EL136_RS01995 WP_012677660.1 410227..410949(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCCTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment