Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EL107_RS04995 | Genome accession | NZ_LR134314 |
| Coordinates | 978594..979085 (-) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC8302 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 937768..1004526 | 978594..979085 | within | 0 |
Gene organization within MGE regions
Location: 937768..1004526
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL107_RS04750 (NCTC8302_00948) | prx | 937768..937950 (-) | 183 | WP_047149504.1 | hypothetical protein | Regulator |
| EL107_RS04755 (NCTC8302_00950) | - | 938647..939852 (-) | 1206 | WP_126409747.1 | glucosaminidase domain-containing protein | - |
| EL107_RS04760 (NCTC8302_00952) | - | 939975..940202 (-) | 228 | WP_029714020.1 | phage holin | - |
| EL107_RS04765 (NCTC8302_00953) | - | 940199..940471 (-) | 273 | WP_011017397.1 | hypothetical protein | - |
| EL107_RS04770 (NCTC8302_00954) | - | 940483..941121 (-) | 639 | WP_046735270.1 | hypothetical protein | - |
| EL107_RS04775 (NCTC8302_00955) | - | 941124..941552 (-) | 429 | WP_002988448.1 | DUF1617 family protein | - |
| EL107_RS04780 (NCTC8302_00956) | - | 941564..943468 (-) | 1905 | WP_126409749.1 | gp58-like family protein | - |
| EL107_RS04785 (NCTC8302_00957) | - | 943483..944598 (-) | 1116 | WP_011888927.1 | hyaluronoglucosaminidase | - |
| EL107_RS04790 (NCTC8302_00958) | - | 944595..946574 (-) | 1980 | WP_011888928.1 | phage tail protein | - |
| EL107_RS04795 (NCTC8302_00959) | - | 946584..947426 (-) | 843 | WP_011054865.1 | phage tail family protein | - |
| EL107_RS04800 (NCTC8302_00960) | - | 947438..951820 (-) | 4383 | WP_126409752.1 | tape measure protein | - |
| EL107_RS04805 (NCTC8302_00961) | - | 951835..952068 (-) | 234 | WP_011888930.1 | hypothetical protein | - |
| EL107_RS04810 (NCTC8302_00962) | - | 952143..952598 (-) | 456 | WP_011888931.1 | tail assembly chaperone | - |
| EL107_RS04815 (NCTC8302_00963) | - | 952652..953251 (-) | 600 | WP_011054869.1 | phage major tail protein, TP901-1 family | - |
| EL107_RS04820 (NCTC8302_00964) | - | 953263..953622 (-) | 360 | WP_011054870.1 | hypothetical protein | - |
| EL107_RS04825 (NCTC8302_00965) | - | 953626..953970 (-) | 345 | WP_011106640.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| EL107_RS04830 (NCTC8302_00966) | - | 953967..954245 (-) | 279 | WP_011054872.1 | hypothetical protein | - |
| EL107_RS04835 (NCTC8302_00967) | - | 954256..954612 (-) | 357 | WP_011888932.1 | phage head-tail connector protein | - |
| EL107_RS04840 (NCTC8302_00968) | - | 954624..955511 (-) | 888 | WP_002983429.1 | hypothetical protein | - |
| EL107_RS04845 (NCTC8302_00969) | - | 955524..956093 (-) | 570 | WP_011888933.1 | DUF4355 domain-containing protein | - |
| EL107_RS04850 (NCTC8302_00970) | - | 956255..956521 (-) | 267 | WP_011888934.1 | hypothetical protein | - |
| EL107_RS04855 | - | 956526..956714 (-) | 189 | WP_011054876.1 | hypothetical protein | - |
| EL107_RS04860 (NCTC8302_00972) | - | 956742..958190 (-) | 1449 | WP_032465703.1 | minor capsid protein | - |
| EL107_RS04865 (NCTC8302_00973) | - | 958150..959682 (-) | 1533 | WP_038433243.1 | phage portal protein | - |
| EL107_RS04870 (NCTC8302_00974) | - | 959698..960975 (-) | 1278 | WP_011054879.1 | PBSX family phage terminase large subunit | - |
| EL107_RS04875 (NCTC8302_00975) | - | 960965..961417 (-) | 453 | WP_011106637.1 | terminase small subunit | - |
| EL107_RS04880 (NCTC8302_00976) | - | 961507..961923 (-) | 417 | WP_011054881.1 | transcriptional regulator | - |
| EL107_RS04885 (NCTC8302_00978) | - | 962056..962328 (-) | 273 | WP_011054882.1 | hypothetical protein | - |
| EL107_RS09445 (NCTC8302_00979) | - | 962321..962491 (-) | 171 | WP_011054883.1 | hypothetical protein | - |
| EL107_RS04890 (NCTC8302_00980) | - | 962492..963814 (-) | 1323 | WP_047149508.1 | SNF2-related protein | - |
| EL107_RS04895 (NCTC8302_00981) | - | 963811..964086 (-) | 276 | WP_011054885.1 | VRR-NUC domain-containing protein | - |
| EL107_RS04900 (NCTC8302_00982) | - | 964472..966856 (-) | 2385 | WP_047149509.1 | phage/plasmid primase, P4 family | - |
| EL107_RS04905 (NCTC8302_00983) | - | 966861..968783 (-) | 1923 | WP_047149510.1 | DNA polymerase | - |
| EL107_RS04910 (NCTC8302_00984) | - | 968826..969389 (-) | 564 | WP_086934854.1 | DUF2815 family protein | - |
| EL107_RS04915 (NCTC8302_00985) | - | 969398..970555 (-) | 1158 | WP_011888943.1 | DUF2800 domain-containing protein | - |
| EL107_RS04920 (NCTC8302_00986) | - | 970555..970855 (-) | 301 | Protein_954 | hypothetical protein | - |
| EL107_RS04925 (NCTC8302_00988) | - | 970943..971146 (-) | 204 | WP_030127426.1 | hypothetical protein | - |
| EL107_RS04930 (NCTC8302_00990) | - | 971292..971679 (-) | 388 | Protein_956 | hypothetical protein | - |
| EL107_RS04935 (NCTC8302_00991) | - | 971676..971879 (-) | 204 | WP_047149512.1 | hypothetical protein | - |
| EL107_RS04940 (NCTC8302_00992) | - | 971872..972042 (-) | 171 | WP_023611037.1 | hypothetical protein | - |
| EL107_RS04945 (NCTC8302_00993) | - | 972071..972328 (-) | 258 | WP_047149513.1 | hypothetical protein | - |
| EL107_RS04950 (NCTC8302_00994) | - | 972416..972616 (-) | 201 | WP_227868729.1 | hypothetical protein | - |
| EL107_RS04955 (NCTC8302_00995) | - | 972667..972858 (-) | 192 | WP_001283052.1 | hypothetical protein | - |
| EL107_RS04960 (NCTC8302_00996) | - | 973499..973849 (+) | 351 | WP_011184049.1 | helix-turn-helix domain-containing protein | - |
| EL107_RS04965 (NCTC8302_00997) | - | 973863..974246 (+) | 384 | WP_047149515.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EL107_RS04970 (NCTC8302_00998) | - | 974257..974808 (+) | 552 | WP_047149516.1 | hypothetical protein | - |
| EL107_RS04975 (NCTC8302_00999) | - | 974984..976081 (+) | 1098 | WP_047149517.1 | site-specific integrase | - |
| EL107_RS04980 (NCTC8302_01000) | - | 976325..977269 (+) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
| EL107_RS04985 (NCTC8302_01001) | - | 977401..978057 (+) | 657 | WP_002983144.1 | DUF1129 domain-containing protein | - |
| EL107_RS04990 (NCTC8302_01002) | rpsR | 978190..978429 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| EL107_RS04995 (NCTC8302_01003) | ssb | 978594..979085 (-) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| EL107_RS05000 (NCTC8302_01004) | rpsF | 979107..979397 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| EL107_RS05005 (NCTC8302_01005) | - | 979570..979863 (-) | 294 | WP_002983113.1 | hypothetical protein | - |
| EL107_RS05010 (NCTC8302_01006) | mutY | 980031..981185 (+) | 1155 | WP_002988276.1 | A/G-specific adenine glycosylase | - |
| EL107_RS05015 (NCTC8302_01007) | - | 981350..981874 (+) | 525 | Protein_973 | helix-turn-helix domain-containing protein | - |
| EL107_RS05020 (NCTC8302_01008) | trxA | 981926..982240 (-) | 315 | WP_001162959.1 | thioredoxin | - |
| EL107_RS05025 (NCTC8302_01009) | - | 982321..982821 (-) | 501 | WP_126409754.1 | phosphatase PAP2 family protein | - |
| EL107_RS05030 (NCTC8302_01010) | - | 982825..985164 (-) | 2340 | WP_023078038.1 | endonuclease MutS2 | - |
| EL107_RS05035 (NCTC8302_01011) | - | 985313..985858 (-) | 546 | WP_011184926.1 | CvpA family protein | - |
| EL107_RS05040 (NCTC8302_01012) | - | 985861..986169 (-) | 309 | WP_002993251.1 | hypothetical protein | - |
| EL107_RS05045 (NCTC8302_01013) | rnhC | 986326..987228 (+) | 903 | WP_010922635.1 | ribonuclease HIII | - |
| EL107_RS05050 (NCTC8302_01014) | lepB | 987239..987832 (+) | 594 | WP_002983074.1 | signal peptidase I | - |
| EL107_RS05055 (NCTC8302_01015) | - | 987890..990343 (+) | 2454 | WP_011184928.1 | ATP-dependent RecD-like DNA helicase | - |
| EL107_RS05060 (NCTC8302_01016) | - | 990434..990916 (+) | 483 | WP_002983066.1 | hypothetical protein | - |
| EL107_RS05065 (NCTC8302_01017) | dinB | 991009..992103 (-) | 1095 | WP_002983063.1 | DNA polymerase IV | - |
| EL107_RS05070 (NCTC8302_01018) | pflB | 992312..994639 (+) | 2328 | WP_002988233.1 | formate C-acetyltransferase | - |
| EL107_RS05075 (NCTC8302_01019) | - | 994819..995769 (-) | 951 | WP_011018196.1 | serine hydrolase domain-containing protein | - |
| EL107_RS05080 (NCTC8302_01020) | - | 995754..996506 (-) | 753 | WP_011184930.1 | CppA N-terminal domain-containing protein | - |
| EL107_RS05085 (NCTC8302_01021) | - | 996804..997700 (+) | 897 | WP_002983050.1 | sulfite exporter TauE/SafE family protein | - |
| EL107_RS05090 (NCTC8302_01022) | gla | 998036..998884 (-) | 849 | WP_002983047.1 | aquaglyceroporin Gla | - |
| EL107_RS05105 (NCTC8302_01023) | - | 999356..1000552 (-) | 1197 | WP_002993271.1 | MFS transporter | - |
| EL107_RS05110 (NCTC8302_01024) | - | 1000718..1001377 (+) | 660 | WP_023078539.1 | Crp/Fnr family transcriptional regulator | - |
| EL107_RS05115 (NCTC8302_01025) | - | 1001399..1003681 (+) | 2283 | WP_011184932.1 | Xaa-Pro dipeptidyl-peptidase | - |
| EL107_RS05120 (NCTC8302_01026) | - | 1003761..1003982 (-) | 222 | WP_002988211.1 | helix-turn-helix domain-containing protein | - |
| EL107_RS05125 (NCTC8302_01027) | - | 1004152..1004526 (+) | 375 | WP_002992262.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1121133 EL107_RS04995 WP_002983122.1 978594..979085(-) (ssb) [Streptococcus pyogenes strain NCTC8302]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1121133 EL107_RS04995 WP_002983122.1 978594..979085(-) (ssb) [Streptococcus pyogenes strain NCTC8302]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |