Detailed information NTG1121092

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EL143_RS04880
• Genome accession: NZ_LR134313
• Coordinates: 1058761..1059639 (+)
• Length: 292 a.a.
• NCBI ID: WP_126326629.1
• Uniprot ID: -
• Organism: Neisseria canis strain NCTC10296
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1053761..1064639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL143_RS04860 (NCTC10296_00975)	-	1053854..1054324 (-)	471	WP_085416673.1	low molecular weight protein-tyrosine-phosphatase	-
EL143_RS04865 (NCTC10296_00976)	-	1054350..1055447 (-)	1098	WP_085416672.1	conjugal transfer protein	-
EL143_RS04870 (NCTC10296_00977)	pilF	1055809..1057485 (+)	1677	WP_085416671.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EL143_RS04875 (NCTC10296_00978)	pilG	1057527..1058774 (+)	1248	WP_085416670.1	type II secretion system F family protein	Machinery gene
EL143_RS04880 (NCTC10296_00979)	pilD	1058761..1059639 (+)	879	WP_126326629.1	A24 family peptidase	Machinery gene
EL143_RS04885 (NCTC10296_00980)	coaE	1059636..1060241 (+)	606	WP_085416669.1	dephospho-CoA kinase	-
EL143_RS04890 (NCTC10296_00981)	yacG	1060420..1060602 (+)	183	WP_085416668.1	DNA gyrase inhibitor YacG	-
EL143_RS04895 (NCTC10296_00982)	-	1060834..1061409 (+)	576	WP_085416667.1	hypothetical protein	-
EL143_RS04900 (NCTC10296_00983)	-	1061585..1062976 (+)	1392	WP_197719619.1	chloride channel protein	-
EL143_RS04905 (NCTC10296_00984)	argJ	1062976..1064193 (+)	1218	WP_085416665.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 31939.16 Da
• Isoelectric Point: 9.0286

>NTDB_id=1121092 EL143_RS04880 WP_126326629.1 1058761..1059639(+) (pilD) [Neisseria canis strain NCTC10296]
MLWANMVAEIYAPFVVPIAVVFGLLVGSFLNVVIYRLPVMMEKQWTLFAKEHLNIGLTADEQKPFTLAHPPSRCPKCGAG
VKAWQNIPILSYLLLKGRCGSCHTRISLRYPLVELLTGILFGVMAYQYGWTWLTLGGLVFTAILIALTFIDADTQYLPDS
LTLPLIWLGLIYNLQGDFVPLQQAVLGAVVGYIGLWLLNYLFKKIRGIDGMGGGDFKLFAALGAWLGISTLPAIIFVAAL
VGLVAAIVMRVANTQQQIAFGPSLAIAGWLAFVANEPLRKGIAWWLNSSGLI

Nucleotide

• Length: 879 bp

>NTDB_id=1121092 EL143_RS04880 WP_126326629.1 1058761..1059639(+) (pilD) [Neisseria canis strain NCTC10296]
ATGTTGTGGGCTAATATGGTGGCTGAAATTTACGCGCCGTTTGTTGTGCCGATAGCAGTAGTGTTCGGTTTGCTGGTGGG
CAGTTTTCTGAATGTTGTGATTTACCGTCTTCCGGTTATGATGGAAAAACAGTGGACACTGTTTGCTAAAGAACATCTTA
ACATTGGGCTGACGGCAGACGAGCAAAAGCCTTTTACTTTGGCACATCCTCCTTCACGCTGCCCAAAATGCGGGGCAGGT
GTGAAGGCTTGGCAGAATATTCCGATTCTGAGTTATTTGTTGTTGAAAGGGCGATGCGGCAGTTGCCACACACGGATCAG
CTTGCGCTACCCTCTGGTGGAATTGCTTACGGGAATATTGTTCGGTGTCATGGCTTACCAATACGGCTGGACATGGCTCA
CTTTGGGCGGCTTGGTATTTACGGCAATATTGATTGCGCTGACTTTTATTGACGCCGACACGCAATACTTGCCTGATTCT
TTAACGCTGCCTCTGATTTGGCTGGGTTTGATTTATAACTTACAGGGTGATTTCGTACCTTTGCAGCAGGCGGTTTTGGG
CGCAGTGGTAGGTTATATCGGTCTCTGGTTGCTTAATTATCTATTTAAAAAAATCCGCGGTATCGATGGCATGGGCGGCG
GTGATTTTAAACTGTTTGCAGCACTGGGAGCATGGTTGGGTATCAGTACATTACCGGCAATTATCTTTGTGGCGGCTTTG
GTGGGTTTGGTTGCGGCTATTGTGATGCGTGTGGCCAATACCCAACAGCAGATTGCATTCGGTCCAAGTTTGGCGATTGC
AGGTTGGTTGGCTTTTGTTGCCAACGAACCTTTACGGAAAGGCATTGCTTGGTGGCTTAATTCTTCGGGATTGATATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	66.667	95.548	0.637
pilD	Vibrio cholerae strain A1552	44.718	97.26	0.435
pilD	Acinetobacter nosocomialis M2	46.718	88.699	0.414
pilD	Acinetobacter baumannii D1279779	46.718	88.699	0.414
pilD	Vibrio campbellii strain DS40M4	44.649	92.808	0.414