Detailed information NTG1120996

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: EL121_RS01515
• Genome accession: NZ_LR134310
• Coordinates: 335757..336950 (-)
• Length: 397 a.a.
• NCBI ID: WP_039197143.1
• Uniprot ID: -
• Organism: Actinobacillus equuli strain NCTC8529
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 330757..341950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL121_RS01490 (NCTC8529_00300)	lptE	332549..333043 (+)	495	WP_005597385.1	LPS assembly lipoprotein LptE	-
EL121_RS01495 (NCTC8529_00301)	holA	333151..334176 (+)	1026	WP_039197140.1	DNA polymerase III subunit delta	-
EL121_RS01500 (NCTC8529_00302)	yacG	334253..334441 (-)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-
EL121_RS01505 (NCTC8529_00303)	coaE	334423..335061 (-)	639	WP_039197141.1	dephospho-CoA kinase	-
EL121_RS01510 (NCTC8529_00304)	-	335083..335757 (-)	675	WP_039197142.1	fimbrial protein	-
EL121_RS01515 (NCTC8529_00305)	pilC	335757..336950 (-)	1194	WP_039197143.1	type II secretion system F family protein	Machinery gene
EL121_RS01520	-	336943..338326 (-)	1384	Protein_296	GspE/PulE family protein	-
EL121_RS01525 (NCTC8529_00308)	pilA	338347..338784 (-)	438	WP_039197145.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
EL121_RS01530 (NCTC8529_00309)	radA	338965..340344 (+)	1380	WP_039197146.1	DNA repair protein RadA	Machinery gene
EL121_RS01535 (NCTC8529_00310)	pepB	340410..341693 (+)	1284	WP_039199020.1	aminopeptidase PepB	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44883.42 Da
• Isoelectric Point: 9.7263

>NTDB_id=1120996 EL121_RS01515 WP_039197143.1 335757..336950(-) (pilC) [Actinobacillus equuli strain NCTC8529]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQSLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLFCFAKKFGN
LTACQMRLLSYIPFFNQVIRYIRIIFFTQNLALMLSAHLHLEAALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGGLV

Nucleotide

• Length: 1194 bp

>NTDB_id=1120996 EL121_RS01515 WP_039197143.1 335757..336950(-) (pilC) [Actinobacillus equuli strain NCTC8529]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAGTTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGTTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATATACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGCTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGGTCTCGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	48.615	100	0.486
pilC	Haemophilus influenzae Rd KW20	39	100	0.393
pilC	Haemophilus influenzae 86-028NP	38.75	100	0.39