Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EL295_RS32460 Genome accession   NZ_LR134308
Coordinates   6702047..6703384 (-) Length   445 a.a.
NCBI ID   WP_003110427.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NCTC11445     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6697047..6708384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL295_RS32430 (NCTC11445_06357) pilX 6697698..6698285 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  EL295_RS32435 (NCTC11445_06358) pilW 6698282..6699106 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  EL295_RS32440 (NCTC11445_06359) pilV 6699103..6699660 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  EL295_RS32445 (NCTC11445_06360) - 6699651..6700157 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  EL295_RS32450 (NCTC11445_06361) - 6700263..6700772 (-) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  EL295_RS32455 (NCTC11445_06362) thiO 6700907..6702001 (+) 1095 WP_012614545.1 glycine oxidase ThiO -
  EL295_RS32460 (NCTC11445_06363) pilR 6702047..6703384 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  EL295_RS32465 (NCTC11445_06364) pilS 6703399..6704991 (-) 1593 WP_003110428.1 two-component system sensor histidine kinase PilS Regulator
  EL295_RS32470 (NCTC11445_06365) - 6704981..6705226 (-) 246 WP_009316269.1 PP0621 family protein -
  EL295_RS32475 (NCTC11445_06366) - 6705383..6706408 (-) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  EL295_RS32480 (NCTC11445_06367) rluD 6706554..6707516 (+) 963 WP_033973880.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL295_RS32485 (NCTC11445_06368) pgeF 6707513..6708241 (+) 729 WP_003102588.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49723.03 Da        Isoelectric Point: 5.8638

>NTDB_id=1120957 EL295_RS32460 WP_003110427.1 6702047..6703384(-) (pilR) [Pseudomonas aeruginosa strain NCTC11445]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1120957 EL295_RS32460 WP_003110427.1 6702047..6703384(-) (pilR) [Pseudomonas aeruginosa strain NCTC11445]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGCCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCAGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384

Multiple sequence alignment