Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   EL115_RS09525 Genome accession   NZ_LR134307
Coordinates   1889907..1890674 (+) Length   255 a.a.
NCBI ID   WP_003071657.1    Uniprot ID   U2YCD6
Organism   Streptococcus milleri strain NCTC10708     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884907..1895674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS09495 (NCTC10708_01879) comE 1885460..1886209 (-) 750 WP_126441852.1 competence system response regulator transcription factor ComE Regulator
  EL115_RS09500 (NCTC10708_01880) comD/comD2 1886209..1887531 (-) 1323 WP_126441853.1 GHKL domain-containing protein Regulator
  EL115_RS09505 (NCTC10708_01881) - 1887546..1887695 (-) 150 WP_080983098.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  EL115_RS09515 (NCTC10708_01883) rlmH 1887978..1888457 (-) 480 WP_126441854.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL115_RS09520 (NCTC10708_01884) htrA 1888662..1889852 (+) 1191 WP_006270334.1 S1C family serine protease Regulator
  EL115_RS09525 (NCTC10708_01885) spo0J 1889907..1890674 (+) 768 WP_003071657.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29713.19 Da        Isoelectric Point: 9.5149

>NTDB_id=1120925 EL115_RS09525 WP_003071657.1 1889907..1890674(+) (spo0J) [Streptococcus milleri strain NCTC10708]
MEKYQYITLNDIQTNPYQPRKEFSEEKIAELANSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
VTDDEMMKQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIAQTMGKSRPYITNSVRLLNLPLNIMEAIKEGRISQGHA
RLLINLSEKEQNQWFTKILSQELSVRQLEKQLHPHQKKTSAKNKYQLFLKEEENRLKKIFGTEISLQFSKQSQSGKICIH
FSSQEEYQRIIDSFK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1120925 EL115_RS09525 WP_003071657.1 1889907..1890674(+) (spo0J) [Streptococcus milleri strain NCTC10708]
ATGGAAAAATATCAATATATTACACTCAATGACATCCAAACAAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGAAAA
AATTGCTGAACTTGCTAATTCTATAAAAGAACATGGGATTATTCAGCCCATCATTGTACGAAAATCTCCAATAATTGGTT
ATGAATTATTAGCTGGTGAAAGGCGTTTTAGAGCTGCTAAATTAGCAGGCTTAACTAATATACCAGCTATTATAAAAGAA
GTAACAGATGATGAAATGATGAAGCAAGCCATTATTGAAAATTTACAACGAGAAGACTTAAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTAATTGACAAAGGGTTGACACACAAAGAAATCGCTCAAACAATGGGAAAATCACGTCCTTATATTA
CAAATTCTGTCCGTTTATTAAACTTACCTCTTAATATTATGGAAGCGATAAAAGAAGGAAGAATTTCTCAAGGACATGCT
CGTTTACTTATCAACTTATCAGAAAAAGAGCAAAATCAGTGGTTCACTAAAATCCTATCTCAAGAACTTTCAGTTCGACA
GCTAGAAAAACAATTGCATCCACATCAAAAAAAGACTTCAGCAAAAAACAAGTACCAACTTTTTCTCAAAGAAGAAGAAA
ACAGATTAAAAAAGATATTCGGTACAGAAATCTCACTCCAATTTTCTAAGCAATCGCAATCTGGAAAAATCTGTATTCAC
TTTTCAAGTCAAGAAGAATATCAAAGAATTATTGACAGCTTTAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-190)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2YCD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

53.725

100

0.537

Multiple sequence alignment