Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL115_RS01450 Genome accession   NZ_LR134307
Coordinates   274153..274644 (+) Length   163 a.a.
NCBI ID   WP_126441150.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC10708     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 269153..279644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS01415 (NCTC10708_00285) - 269702..270541 (+) 840 WP_172594012.1 Cof-type HAD-IIB family hydrolase -
  EL115_RS09765 - 270553..271145 (+) 593 Protein_259 histidine phosphatase family protein -
  EL115_RS01430 (NCTC10708_00288) - 271226..271654 (-) 429 WP_126441147.1 hypothetical protein -
  EL115_RS01435 (NCTC10708_00289) - 271629..272534 (-) 906 WP_126441148.1 phosphodiester glycosidase family protein -
  EL115_RS01440 (NCTC10708_00290) - 272531..273574 (-) 1044 WP_126441149.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  EL115_RS01445 (NCTC10708_00291) rpsF 273851..274141 (+) 291 WP_003026325.1 30S ribosomal protein S6 -
  EL115_RS01450 (NCTC10708_00292) ssb 274153..274644 (+) 492 WP_126441150.1 single-stranded DNA-binding protein Machinery gene
  EL115_RS01455 (NCTC10708_00293) rpsR 274681..274920 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  EL115_RS01460 (NCTC10708_00294) - 275094..275771 (-) 678 WP_126441151.1 DUF1129 domain-containing protein -
  EL115_RS01465 (NCTC10708_00295) - 275787..276731 (-) 945 WP_003070861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18158.85 Da        Isoelectric Point: 4.7187

>NTDB_id=1120866 EL115_RS01450 WP_126441150.1 274153..274644(+) (ssb) [Streptococcus milleri strain NCTC10708]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGDTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1120866 EL115_RS01450 WP_126441150.1 274153..274644(+) (ssb) [Streptococcus milleri strain NCTC10708]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCGGACTTTATTAATGTTGTAATTT
GGCGCCAACAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACCGGTCGTATTCAGACGCGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGGATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.955

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment