Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL116_RS01665 Genome accession   NZ_LR134304
Coordinates   362643..363146 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 357643..368146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS01630 (NCTC13712_00307) - 358582..359427 (+) 846 WP_047532254.1 ParB/RepB/Spo0J family partition protein -
  EL116_RS01635 (NCTC13712_00308) - 359582..360463 (+) 882 WP_001077600.1 mechanosensitive ion channel family protein -
  EL116_RS01640 (NCTC13712_00309) - 360493..360696 (+) 204 WP_047423892.1 DUF951 domain-containing protein -
  EL116_RS01645 (NCTC13712_00310) ychF 360708..361805 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  EL116_RS01650 (NCTC13712_00311) - 361891..362082 (-) 192 WP_047548654.1 hypothetical protein -
  EL116_RS01660 (NCTC13712_00312) rpsF 362326..362622 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  EL116_RS01665 (NCTC13712_00313) ssbA 362643..363146 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  EL116_RS01670 (NCTC13712_00314) rpsR 363198..363440 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  EL116_RS01675 (NCTC13712_00315) - 363707..364645 (-) 939 WP_078101678.1 Abi family protein -
  EL116_RS13765 - 364696..365385 (-) 690 Protein_316 tyrosine-type recombinase/integrase -
  EL116_RS01690 (NCTC13712_00316) - 365591..366202 (+) 612 WP_047548644.1 exotoxin beta-grasp domain-containing protein -
  EL116_RS01695 - 366424..366564 (+) 141 Protein_318 DUF1093 domain-containing protein -
  EL116_RS01700 (NCTC13712_00317) - 366799..367371 (+) 573 WP_047532306.1 PepSY domain-containing protein -
  EL116_RS01705 (NCTC13712_00318) - 367513..367776 (-) 264 WP_047548641.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1120758 EL116_RS01665 WP_000934799.1 362643..363146(+) (ssbA) [Staphylococcus schweitzeri strain NCTC13712]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1120758 EL116_RS01665 WP_000934799.1 362643..363146(+) (ssbA) [Staphylococcus schweitzeri strain NCTC13712]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTGTCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment