Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL104_RS07825 Genome accession   NZ_LR134298
Coordinates   1615447..1615875 (-) Length   142 a.a.
NCBI ID   WP_074864873.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. gallicida strain NCTC10204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1607269..1626115 1615447..1615875 within 0


Gene organization within MGE regions


Location: 1607269..1626115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL104_RS07755 (NCTC10204_01560) - 1607269..1608300 (-) 1032 WP_074864899.1 tyrosine-type recombinase/integrase -
  EL104_RS07760 (NCTC10204_01561) - 1608302..1608553 (-) 252 WP_042742798.1 DUF4224 domain-containing protein -
  EL104_RS11230 (NCTC10204_01562) - 1608590..1608904 (-) 315 WP_074864895.1 hypothetical protein -
  EL104_RS11235 (NCTC10204_01563) - 1609103..1609378 (-) 276 WP_231998495.1 hypothetical protein -
  EL104_RS07775 (NCTC10204_01564) - 1609385..1609651 (-) 267 WP_074864892.1 hypothetical protein -
  EL104_RS07780 (NCTC10204_01565) - 1609696..1609890 (-) 195 WP_081355200.1 DUF551 domain-containing protein -
  EL104_RS07785 (NCTC10204_01566) - 1609899..1610375 (-) 477 WP_074864890.1 hypothetical protein -
  EL104_RS07790 (NCTC10204_01567) - 1610402..1610860 (-) 459 WP_081355199.1 methyltransferase -
  EL104_RS07795 (NCTC10204_01568) - 1610915..1611475 (-) 561 WP_074864884.1 DUF5420 family protein -
  EL104_RS07800 (NCTC10204_01569) - 1611552..1611863 (-) 312 WP_074864881.1 DUF6378 domain-containing protein -
  EL104_RS11175 (NCTC10204_01570) - 1611860..1612018 (-) 159 WP_170160275.1 hypothetical protein -
  EL104_RS11240 (NCTC10204_01571) - 1612074..1612394 (-) 321 WP_231998496.1 phage antirepressor KilAC domain-containing protein -
  EL104_RS11245 (NCTC10204_01572) - 1612514..1612786 (-) 273 WP_231998497.1 Rha family transcriptional regulator -
  EL104_RS07810 (NCTC10204_01573) - 1612800..1613018 (-) 219 WP_046338488.1 hypothetical protein -
  EL104_RS07815 (NCTC10204_01575) - 1613261..1614166 (-) 906 WP_074864878.1 hypothetical protein -
  EL104_RS07820 (NCTC10204_01576) - 1614303..1615265 (-) 963 WP_074864876.1 putative phage abortive infection protein -
  EL104_RS07825 (NCTC10204_01577) ssb 1615447..1615875 (-) 429 WP_074864873.1 single-stranded DNA-binding protein Machinery gene
  EL104_RS07830 (NCTC10204_01578) - 1615886..1616506 (-) 621 WP_074864870.1 ERF family protein -
  EL104_RS11250 - 1616703..1617140 (-) 438 WP_231998519.1 P22AR C-terminal domain-containing protein -
  EL104_RS11255 (NCTC10204_01579) - 1617132..1617381 (-) 250 Protein_1509 Bro-N domain-containing protein -
  EL104_RS07840 (NCTC10204_01580) - 1617710..1617979 (+) 270 WP_071522863.1 hypothetical protein -
  EL104_RS07845 (NCTC10204_01581) - 1617976..1618668 (-) 693 WP_074864866.1 ribonuclease H-like domain-containing protein -
  EL104_RS07850 (NCTC10204_01582) - 1618671..1619258 (-) 588 WP_005756682.1 hypothetical protein -
  EL104_RS11180 (NCTC10204_01583) - 1619432..1619593 (-) 162 WP_170160276.1 hypothetical protein -
  EL104_RS07855 (NCTC10204_01584) - 1619603..1619851 (-) 249 WP_074864863.1 hypothetical protein -
  EL104_RS07860 (NCTC10204_01585) - 1619999..1620229 (+) 231 WP_231998499.1 hypothetical protein -
  EL104_RS07865 (NCTC10204_01586) - 1620293..1620979 (-) 687 WP_081355198.1 Bro-N domain-containing protein -
  EL104_RS07870 (NCTC10204_01587) - 1621231..1622520 (-) 1290 WP_074864857.1 hypothetical protein -
  EL104_RS07875 (NCTC10204_01588) - 1622771..1623181 (+) 411 WP_074864854.1 hypothetical protein -
  EL104_RS07880 (NCTC10204_01589) - 1623399..1623662 (+) 264 WP_074864851.1 DUF1883 domain-containing protein -
  EL104_RS07885 - 1623652..1623834 (-) 183 WP_074864848.1 hypothetical protein -
  EL104_RS07890 - 1623847..1624059 (-) 213 WP_231998500.1 hypothetical protein -
  EL104_RS07895 (NCTC10204_01590) - 1624168..1624755 (+) 588 WP_081355197.1 DUF4376 domain-containing protein -
  EL104_RS07900 (NCTC10204_01591) - 1624745..1625002 (+) 258 WP_074864845.1 DNA helicase UvrD -
  EL104_RS07905 (NCTC10204_01592) - 1625273..1626115 (-) 843 WP_005726500.1 patatin family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15921.88 Da        Isoelectric Point: 7.8451

>NTDB_id=1120696 EL104_RS07825 WP_074864873.1 1615447..1615875(-) (ssb) [Pasteurella multocida subsp. gallicida strain NCTC10204]
MAGVNRVIILGNLGNDPEIRTMPNGDAVAKISVATSESWIDKNTNERKTQTEWHSIVCYRRQAEIVAEYLRKGSKVYIEG
RLRTRKWQDKSGQERYITEILADKIVLLDSKQSAGTGNGSPPPAQQQHDPYGDAFSCDNIPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1120696 EL104_RS07825 WP_074864873.1 1615447..1615875(-) (ssb) [Pasteurella multocida subsp. gallicida strain NCTC10204]
ATGGCTGGAGTTAATCGTGTAATTATTTTAGGGAATTTGGGTAACGATCCTGAAATCCGCACAATGCCAAATGGCGACGC
AGTAGCAAAAATTAGTGTGGCTACGAGCGAAAGCTGGATCGACAAAAACACAAACGAGCGCAAAACGCAGACAGAATGGC
ACTCTATCGTGTGTTATCGCCGTCAAGCAGAAATCGTTGCCGAATATCTTCGCAAGGGTTCAAAAGTCTATATTGAAGGT
CGTTTGCGAACTCGAAAATGGCAAGATAAAAGCGGACAAGAACGATACATCACAGAAATTCTTGCAGATAAGATCGTCTT
GCTTGATAGCAAGCAGAGTGCGGGTACTGGCAATGGCAGTCCACCACCAGCACAACAGCAACATGATCCGTATGGTGACG
CATTTAGTTGTGACAACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

59.184

100

0.613
  ssb Neisseria meningitidis MC58

44.521

100

0.458
  ssb Neisseria gonorrhoeae MS11

44.521

100

0.458
  ssb Vibrio cholerae strain A1552

63.636

69.718

0.444

Multiple sequence alignment