Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL104_RS00525 Genome accession   NZ_LR134298
Coordinates   98258..98758 (-) Length   166 a.a.
NCBI ID   WP_074865995.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. gallicida strain NCTC10204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 93258..103758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL104_RS00485 (NCTC10204_00098) ybeD 93771..94067 (+) 297 WP_005719420.1 DUF493 family protein YbeD -
  EL104_RS00490 (NCTC10204_00099) lipB 94074..94730 (+) 657 WP_074865992.1 lipoyl(octanoyl) transferase LipB -
  EL104_RS00495 (NCTC10204_00100) lipA 94795..95757 (+) 963 WP_005719422.1 lipoyl synthase -
  EL104_RS00500 (NCTC10204_00101) - 95835..96254 (-) 420 WP_005719426.1 DUF417 family protein -
  EL104_RS00515 (NCTC10204_00104) folD 96897..97751 (+) 855 WP_005725034.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  EL104_RS00520 (NCTC10204_00105) - 97821..98051 (+) 231 WP_231998506.1 hypothetical protein -
  EL104_RS00525 (NCTC10204_00106) ssb 98258..98758 (-) 501 WP_074865995.1 single-stranded DNA-binding protein Machinery gene
  EL104_RS00530 (NCTC10204_00107) uvrA 98930..101761 (+) 2832 WP_074865998.1 excinuclease ABC subunit UvrA -
  EL104_RS00535 (NCTC10204_00108) sodC 101832..102392 (+) 561 WP_005725042.1 superoxide dismutase family protein -
  EL104_RS00540 (NCTC10204_00109) rlmB 102478..103215 (-) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18639.64 Da        Isoelectric Point: 5.3353

>NTDB_id=1120679 EL104_RS00525 WP_074865995.1 98258..98758(-) (ssb) [Pasteurella multocida subsp. gallicida strain NCTC10204]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPVDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1120679 EL104_RS00525 WP_074865995.1 98258..98758(-) (ssb) [Pasteurella multocida subsp. gallicida strain NCTC10204]
ATGGCTGGAATAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTCAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACTGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAATGAACCACCTGTAGATATGGGATTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.132

100

0.747
  ssb Vibrio cholerae strain A1552

52.486

100

0.572
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47

Multiple sequence alignment