Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL084_RS07705 Genome accession   NZ_LR134292
Coordinates   1531059..1531565 (-) Length   168 a.a.
NCBI ID   WP_115255474.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC10389     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1526059..1536565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS07675 (NCTC10389_01620) - 1527334..1528278 (+) 945 WP_126440665.1 magnesium transporter CorA family protein -
  EL084_RS07680 (NCTC10389_01621) - 1528749..1529405 (+) 657 WP_115255470.1 DUF1129 domain-containing protein -
  EL084_RS07685 (NCTC10389_01622) - 1529446..1529877 (-) 432 WP_164557719.1 hypothetical protein -
  EL084_RS07690 (NCTC10389_01623) - 1529864..1530088 (-) 225 WP_126440669.1 helix-turn-helix domain-containing protein -
  EL084_RS07695 (NCTC10389_01624) - 1530090..1530476 (-) 387 WP_232007662.1 DUF2975 domain-containing protein -
  EL084_RS07700 (NCTC10389_01625) rpsR 1530760..1530999 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  EL084_RS07705 (NCTC10389_01626) ssbA 1531059..1531565 (-) 507 WP_115255474.1 single-stranded DNA-binding protein Machinery gene
  EL084_RS07710 (NCTC10389_01627) rpsF 1531577..1531867 (-) 291 WP_004233201.1 30S ribosomal protein S6 -
  EL084_RS07715 (NCTC10389_01628) - 1532074..1532238 (-) 165 WP_021143095.1 hypothetical protein -
  EL084_RS07720 (NCTC10389_01629) - 1532413..1533351 (-) 939 WP_126440671.1 class C sortase -
  EL084_RS07725 (NCTC10389_01630) - 1533448..1534866 (-) 1419 WP_126440673.1 SpaA isopeptide-forming pilin-related protein -
  EL084_RS07730 (NCTC10389_01631) - 1534890..1535177 (-) 288 Protein_1487 S24/S26 family peptidase -
  EL084_RS07735 (NCTC10389_01632) - 1535164..1535433 (-) 270 WP_126440675.1 DNA repair protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18642.30 Da        Isoelectric Point: 4.7294

>NTDB_id=1120462 EL084_RS07705 WP_115255474.1 1531059..1531565(-) (ssbA) [Streptococcus equinus strain NCTC10389]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADSFQILESRATREGQSGGSYNGGFNNNSSFGESSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1120462 EL084_RS07705 WP_115255474.1 1531059..1531565(-) (ssbA) [Streptococcus equinus strain NCTC10389]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAACCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGTCAGCAAGCTGAAAACTTAGCTAACTGGGCTAAAAAAGGTACATTGATTGGTGTTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGTCAGCGCGTTTACGTAACTGAGATTGTTGCAGATAGCTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGACAATCTGGTGGTTCTTACAATGGTGGATTCAATAACAATTCATCATTTGGTGAATCTTCAAACGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAATTTCGGTCGTGACGAAAGCCCATTTGGTAACTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.101

100

0.619
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.607
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

64.881

0.363

Multiple sequence alignment