Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   EL084_RS07330 Genome accession   NZ_LR134292
Coordinates   1460784..1461476 (-) Length   230 a.a.
NCBI ID   WP_004233044.1    Uniprot ID   E8JQ25
Organism   Streptococcus equinus strain NCTC10389     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455784..1466476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS07310 (NCTC10389_01548) dnaI 1456593..1457495 (-) 903 WP_004233039.1 primosomal protein DnaI -
  EL084_RS07315 (NCTC10389_01549) - 1457506..1458657 (-) 1152 WP_126440612.1 DnaD domain protein -
  EL084_RS07320 (NCTC10389_01550) nrdR 1458644..1459138 (-) 495 WP_004233042.1 transcriptional regulator NrdR -
  EL084_RS07325 (NCTC10389_01551) - 1459297..1460679 (-) 1383 WP_232007657.1 ATP-binding protein -
  EL084_RS07330 (NCTC10389_01552) covR 1460784..1461476 (-) 693 WP_004233044.1 response regulator transcription factor Regulator
  EL084_RS07335 (NCTC10389_01553) - 1461708..1462244 (-) 537 WP_080552917.1 YceD family protein -
  EL084_RS07340 (NCTC10389_01554) htpX 1462390..1463289 (-) 900 WP_044023350.1 zinc metalloprotease HtpX -
  EL084_RS07345 (NCTC10389_01555) - 1463406..1463957 (-) 552 WP_004233049.1 LemA family protein -
  EL084_RS07350 (NCTC10389_01556) rsmG 1464251..1464964 (+) 714 WP_126440614.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  EL084_RS07355 (NCTC10389_01557) - 1465030..1466403 (+) 1374 WP_044023351.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26438.32 Da        Isoelectric Point: 4.7095

>NTDB_id=1120460 EL084_RS07330 WP_004233044.1 1460784..1461476(-) (covR) [Streptococcus equinus strain NCTC10389]
MSKKILIIEDEKNLARFVSLELQHEGYSVVVETNGRLGLQTALDDDFDLILLDLMLPDMDGFEITRRLRLEKETSIIMMT
ARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQEANSEHDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKR
EYDLLSVLLSNVNRVMTREELLASVWRYDTDIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYIIREK

Nucleotide


Download         Length: 693 bp        

>NTDB_id=1120460 EL084_RS07330 WP_004233044.1 1460784..1461476(-) (covR) [Streptococcus equinus strain NCTC10389]
ATGAGTAAAAAGATTTTAATTATTGAGGATGAAAAAAATCTTGCACGCTTCGTGTCTTTGGAGTTACAACACGAAGGGTA
TTCAGTAGTTGTTGAGACAAATGGGCGTTTAGGTTTACAAACGGCTTTAGATGATGATTTTGATTTGATCCTGTTGGACT
TGATGTTGCCTGATATGGATGGATTCGAAATTACACGTCGTCTTCGTTTGGAAAAAGAAACTTCAATTATCATGATGACA
GCTCGTGATTCAATCATGGATATCGTTGCTGGTCTTGATCGTGGCGCAGATGATTATATCGTAAAACCATTCGCTATTGA
AGAACTATTAGCGCGTGTGCGTGCAGTGTTCCGTCGTCAAGAAGCTAATTCAGAACATGATAAAGAAGGTCAAGCTAAAG
AAGGCTTGCTTGGGCTTCGTCTTAATCCACAAAATCGTTCTGCAGTTCGTGGGGACGATGAAATTTCATTAACAAAACGC
GAATATGATTTGTTAAGTGTTCTTCTTTCAAACGTTAACCGAGTGATGACACGTGAAGAATTACTTGCAAGTGTTTGGCG
TTATGATACTGATATCGAAACAAACGTAGTGGATGTTTACATCCGTTATCTTCGTGGAAAAATTGATATTCCTGGTAAAG
AATCATATATCCAAACTGTTCGTGGAATGGGTTATATTATTCGAGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E8JQ25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

75.217

100

0.752
  covR Lactococcus lactis subsp. lactis strain DGCC12653

65.066

99.565

0.648
  vicR Streptococcus mutans UA159

42.424

100

0.426
  micA Streptococcus pneumoniae Cp1015

41.739

100

0.417

Multiple sequence alignment