Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EL191_RS05350 Genome accession   NZ_LR134290
Coordinates   1174982..1176322 (-) Length   446 a.a.
NCBI ID   WP_041977031.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NCTC10897     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169982..1181322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL191_RS05315 (NCTC10897_01066) - 1170255..1170578 (-) 324 WP_017361295.1 hypothetical protein -
  EL191_RS05320 (NCTC10897_01067) - 1170590..1171057 (-) 468 WP_232005510.1 pilus assembly PilX N-terminal domain-containing protein -
  EL191_RS05325 (NCTC10897_01068) - 1171134..1171973 (-) 840 WP_080764245.1 PilW family protein -
  EL191_RS05330 (NCTC10897_01069) pilV 1171970..1172536 (-) 567 WP_017361292.1 type IV pilus modification protein PilV -
  EL191_RS05335 (NCTC10897_01070) - 1172553..1173068 (-) 516 WP_017361291.1 GspH/FimT family pseudopilin -
  EL191_RS05340 (NCTC10897_01071) - 1173179..1173583 (-) 405 WP_169746326.1 GspH/FimT family protein -
  EL191_RS24725 - 1173653..1173703 (-) 51 Protein_1064 hypothetical protein -
  EL191_RS05345 (NCTC10897_01072) - 1173843..1174883 (+) 1041 WP_232005511.1 FAD-binding oxidoreductase -
  EL191_RS05350 (NCTC10897_01073) pilR 1174982..1176322 (-) 1341 WP_041977031.1 sigma-54 dependent transcriptional regulator Regulator
  EL191_RS05355 (NCTC10897_01074) pilS 1176325..1177917 (-) 1593 WP_017361287.1 PAS domain-containing sensor histidine kinase Regulator
  EL191_RS24515 (NCTC10897_01075) - 1177907..1178143 (-) 237 WP_041977033.1 PP0621 family protein -
  EL191_RS05365 (NCTC10897_01076) - 1178339..1179331 (-) 993 WP_013714195.1 outer membrane protein assembly factor BamD -
  EL191_RS05370 (NCTC10897_01077) rluD 1179470..1180444 (+) 975 WP_041977181.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL191_RS05375 (NCTC10897_01078) pgeF 1180441..1181172 (+) 732 WP_041977035.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49773.17 Da        Isoelectric Point: 5.6116

>NTDB_id=1120315 EL191_RS05350 WP_041977031.1 1174982..1176322(-) (pilR) [Ectopseudomonas mendocina strain NCTC10897]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRVVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLADVM
LARLADGTGLAAAKLHPDALEKLKSYRFPGNVRELENMLERAYTLCEDDQITPGDLRLADASGPSNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1120315 EL191_RS05350 WP_041977031.1 1174982..1176322(-) (pilR) [Ectopseudomonas mendocina strain NCTC10897]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGTTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAAGAGGCGCGCGAGTGGCTGGCGCGCGAGCCCTTCGACTTGTGCTTGACCG
ATATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTTCCCGTGGCGATG
ATCACCGCTTACGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGTGGA
CCTCGGCCGGCTGCGCGAACTGGTGGCGACCGCCCTGCGCATTCGCGCACCCGAAGGTGAGGAAACACCAGTCGATAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAGTCGCTGCGTAAGCAGATCCTGAAGCTTTCGCGCAGTCAGGCACCGGTCTAC
ATCAGCGGCGAATCGGGCAGTGGCAAGGAGCTGGTTGCCCGCCTGATCCATGAGCAGGGCCCACGCATCGAACAACCGTT
CGTGCCGGTCAACTGCGGCGCGATACCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGTCACAAGAAGGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGATCTGCCG
TTGCCAATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGGCCGTGCGCGTCGTCGGTGGCCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTTGCCGCCGAAGTCGCTGCTGGCCGCTTCCGTCAGGACCTCTACT
ACCGCCTCAATGTCATCGAGCTGCGCGTGCCACCACTGCGTGAACGTCGCGAGGACATTGCCCTGCTGGCTGACGTGATG
CTCGCGCGCCTGGCCGATGGCACCGGTCTGGCCGCCGCCAAACTGCACCCCGACGCACTGGAAAAGCTGAAGAGCTATCG
CTTCCCTGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTGTGCGAAGACGATCAGATCACGCCCG
GCGACCTGCGCCTGGCCGATGCCAGTGGCCCCAGCAACGAAGGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAAGACATCGAACGCAAGCTGATCATGCAGGCCCTGGAAGAAACACGTTGGAACCGCACAGCGGCGGCGCA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTATCGACTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.238

100

0.892
  pilR Acinetobacter baumannii strain A118

49.673

100

0.511
  luxO Vibrio cholerae strain A1552

38.117

100

0.381

Multiple sequence alignment