Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL087_RS07820 Genome accession   NZ_LR134288
Coordinates   1588614..1589105 (-) Length   163 a.a.
NCBI ID   WP_021002092.1    Uniprot ID   A0A0P0NAS0
Organism   Streptococcus milleri strain NCTC11169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1583614..1594105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL087_RS07805 (NCTC11169_01616) - 1586521..1587465 (+) 945 WP_003026319.1 magnesium transporter CorA family protein -
  EL087_RS07810 (NCTC11169_01617) - 1587481..1588158 (+) 678 WP_117644765.1 DUF1129 domain-containing protein -
  EL087_RS07815 (NCTC11169_01618) rpsR 1588338..1588577 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  EL087_RS07820 (NCTC11169_01619) ssb 1588614..1589105 (-) 492 WP_021002092.1 single-stranded DNA-binding protein Machinery gene
  EL087_RS07825 (NCTC11169_01620) rpsF 1589117..1589407 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  EL087_RS07830 (NCTC11169_01621) - 1589675..1590718 (+) 1044 WP_126407835.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  EL087_RS07835 (NCTC11169_01622) - 1590715..1591620 (+) 906 WP_126407837.1 phosphodiester glycosidase family protein -
  EL087_RS07840 (NCTC11169_01623) - 1591595..1592005 (+) 411 WP_049533362.1 hypothetical protein -
  EL087_RS07845 (NCTC11169_01624) - 1592240..1592842 (-) 603 WP_003030549.1 histidine phosphatase family protein -
  EL087_RS07850 (NCTC11169_01625) - 1592843..1593436 (-) 594 WP_003030523.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18231.94 Da        Isoelectric Point: 4.9008

>NTDB_id=1120280 EL087_RS07820 WP_021002092.1 1588614..1589105(-) (ssb) [Streptococcus milleri strain NCTC11169]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTSNNFGNSSSNFGNSTSVNQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1120280 EL087_RS07820 WP_021002092.1 1588614..1589105(-) (ssb) [Streptococcus milleri strain NCTC11169]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTCATTAACGTTGTGATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAACCAGCAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCTGACAATTTCCAACTGCTAGAAAGCCGTGC
CAGCCGTGAAGGTCAATCTTCTGGTGGCTACACTTCTAATAACTTCGGAAATTCATCTTCCAATTTTGGGAACTCAACTT
CTGTCAATCAAGTACCCAACTTTTCTCGTGATGAAAATCCATTTGGCAATACCAATCCAATGGATATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0NAS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment