Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   EL087_RS03195 Genome accession   NZ_LR134288
Coordinates   655563..656567 (+) Length   334 a.a.
NCBI ID   WP_003040018.1    Uniprot ID   A0AAD2T957
Organism   Streptococcus milleri strain NCTC11169     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 650563..661567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL087_RS03185 (NCTC11169_00643) - 651385..653850 (+) 2466 WP_126406800.1 LTA synthase family protein -
  EL087_RS03190 (NCTC11169_00644) - 654217..655299 (-) 1083 WP_126406802.1 M24 family metallopeptidase -
  EL087_RS03195 (NCTC11169_00645) ccpA 655563..656567 (+) 1005 WP_003040018.1 catabolite control protein A Regulator
  EL087_RS03200 (NCTC11169_00646) - 656747..657745 (+) 999 WP_126406804.1 glycosyltransferase family 4 protein -
  EL087_RS03205 (NCTC11169_00647) - 657747..659060 (+) 1314 WP_003039969.1 glycosyltransferase family 4 protein -
  EL087_RS03210 (NCTC11169_00648) - 659087..659428 (+) 342 WP_003040057.1 hypothetical protein -
  EL087_RS03215 (NCTC11169_00649) micA 659712..660413 (+) 702 WP_003040015.1 response regulator YycF Regulator

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36882.90 Da        Isoelectric Point: 5.5324

>NTDB_id=1120257 EL087_RS03195 WP_003040018.1 655563..656567(+) (ccpA) [Streptococcus milleri strain NCTC11169]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITSSYFA
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKQATIDAVERLTKNNQKIAFVSGPLVDDINGKIRLAGYKEALKKAKLTYSEGLVFESKYSYDDGYQLAERVIASK
ATAAFVTGDELAAGLLNGLSDKGVNVPEDFEIITSDDSQVARFTRPNLTTIGQPLYDLGAISMRMLTKIMHKEELEEREV
VLAHGLIERRSTGK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1120257 EL087_RS03195 WP_003040018.1 655563..656567(+) (ccpA) [Streptococcus milleri strain NCTC11169]
ATGAACACAGACGATACAGTAACCATTTATGATGTCGCGCGTGAAGCGGGAGTTTCAATGGCAACCGTTAGCCGTGTGGT
AAATGGAAATAAAAATGTAAAGGAAAATACAAGAAAAAAAGTCTTGGAAGTGATTGACCGCTTGGATTACCGCCCAAATG
CGGTAGCGCGTGGTCTTGCTAGCAAAAAGACGACGACTGTTGGAGTTGTCATTCCAAATATCACAAGCAGTTATTTTGCA
ACGCTTGCAAAAGGAATTGATGATATCGCAGAGATGTACAAATATAATATTGTCTTAGCCAATAGTGATGAAGATGATGA
CAAAGAAGTTTCTGTTGTCAATACACTGTTCTCAAAACAAGTGGACGGTATTATCTTTATGGGCTATCATTTGACAGAAA
AAATTCGTTCTGAGTTTTCTCGTTCACGGACGCCAGTTGTGCTTGCAGGTACAGTTGATGTCGAGCATCAATTGCCAAGT
GTTAATATTGATTACAAACAAGCAACTATAGATGCAGTTGAACGTCTTACAAAAAATAATCAAAAAATTGCTTTTGTAAG
CGGACCTTTGGTGGATGATATCAATGGTAAGATTCGTTTAGCTGGATACAAAGAAGCTTTGAAGAAAGCCAAACTTACTT
ATAGTGAAGGATTGGTTTTTGAGTCAAAATACAGCTATGATGATGGTTATCAATTAGCAGAACGGGTCATTGCTTCCAAA
GCCACAGCAGCTTTTGTGACTGGTGATGAGCTGGCGGCTGGGCTGTTAAATGGTTTATCAGACAAGGGTGTAAATGTACC
AGAAGATTTTGAAATCATCACTAGCGATGATTCGCAGGTAGCACGCTTCACTCGTCCAAATTTGACAACTATTGGTCAAC
CTTTGTATGACCTTGGTGCAATTAGTATGCGCATGCTGACTAAGATTATGCACAAGGAAGAGCTGGAAGAACGCGAAGTA
GTATTAGCTCATGGTCTTATTGAGCGCCGTTCAACAGGAAAGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

90.12

100

0.901
  ccpA Streptococcus pneumoniae D39

88.623

100

0.886
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.182

98.802

0.575

Multiple sequence alignment