Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EL111_RS02575 Genome accession   NZ_LR134287
Coordinates   546891..548954 (-) Length   687 a.a.
NCBI ID   WP_123795524.1    Uniprot ID   A0A5P3MRN1
Organism   Neisseria animalis strain NCTC10212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541891..553954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL111_RS02550 (NCTC10212_00525) - 542548..542799 (-) 252 WP_123795529.1 NGO1151 family protein -
  EL111_RS02555 (NCTC10212_00526) - 542899..543693 (+) 795 WP_123795528.1 hypothetical protein -
  EL111_RS02560 (NCTC10212_00527) - 543823..544302 (+) 480 WP_123795527.1 DUF3465 domain-containing protein -
  EL111_RS02565 (NCTC10212_00528) aroB 544821..545900 (-) 1080 WP_123795526.1 3-dehydroquinate synthase -
  EL111_RS02570 (NCTC10212_00529) - 546252..546770 (-) 519 WP_123795525.1 shikimate kinase -
  EL111_RS02575 (NCTC10212_00530) pilQ 546891..548954 (-) 2064 WP_123795524.1 type IV pilus secretin PilQ Machinery gene
  EL111_RS02580 (NCTC10212_00531) - 549011..549583 (-) 573 WP_123795523.1 pilus assembly protein PilP -
  EL111_RS02585 (NCTC10212_00532) - 549603..550262 (-) 660 WP_123795522.1 type 4a pilus biogenesis protein PilO -
  EL111_RS02590 (NCTC10212_00533) pilN 550262..550843 (-) 582 WP_123795521.1 PilN domain-containing protein Machinery gene
  EL111_RS02595 (NCTC10212_00534) pilM 550844..551956 (-) 1113 WP_123795520.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74963.02 Da        Isoelectric Point: 8.1958

>NTDB_id=1120203 EL111_RS02575 WP_123795524.1 546891..548954(-) (pilQ) [Neisseria animalis strain NCTC10212]
MKRKHITTLLACLGMTAVLQTAYAGNITDINVSSLPDEQKIIKIRFDRDVVLPSGFISGTPTRIALDFADTRILLPQSVL
EYADPLLNQITAAQNSNRARIVLGLNKTAQYTAEIRDEEVWVYISETADQNTASVSPPENTPYRPAETAHIDFRKGSGGS
GIVELDISGFDGTPDIKEQRDRVIITLNNHAMPTQAQRSLDVGDFNTPVRNITLKRMGNATRLTILNNGLWEMKTRSAAG
RYSFEIRPKSAEAFTDGTNSLTAKSFKGRKLSLDFQNIEVRTILQILAKESGMNIIASDSVGGKMTLSLKDVPWDQALDL
VMQARNLDMRRQGNIINIAPREELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLDERSSNSSSGGNRNT
LLSPRGSALIDSGTNTLIVTDTRSVIEKFRKLIDELDVAARQVMVEARIVEAEDGFSRDLGLKFGYSGNRSGGNTAWGST
WNGGTALGSSPNINLPVAAATSSVALVRSLSSGALGLELSASEAQKKTKTISNPRVLTQDRQEASIESGQEIPYQESSSS
GATSVTFKKAVLGLTVTPNITPDGQIIMNVKINRDTPVACQTDGVQTLCISTKNLTTQAMVEDGGTLIIGGIYEESSGNS
INKVPLLGDIPVIGNLFKSRARSEERKELLVFITPRIMDGQGNNLRY

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=1120203 EL111_RS02575 WP_123795524.1 546891..548954(-) (pilQ) [Neisseria animalis strain NCTC10212]
ATGAAACGCAAACACATCACCACACTGCTCGCCTGTTTGGGTATGACTGCCGTTTTGCAGACGGCATATGCCGGAAACAT
TACCGACATCAACGTATCTTCCCTGCCCGACGAACAGAAAATCATCAAAATCCGCTTTGACCGCGATGTCGTCCTGCCCA
GCGGCTTTATCAGCGGCACACCCACCCGTATTGCATTGGACTTTGCCGATACCCGCATTCTGCTGCCGCAATCCGTACTC
GAATATGCCGATCCCCTGCTGAACCAAATCACCGCCGCGCAAAACAGCAACCGCGCGCGCATCGTTCTGGGCTTGAATAA
AACCGCACAATATACTGCCGAAATCCGCGACGAAGAAGTGTGGGTATATATCAGCGAAACCGCCGACCAAAACACAGCCT
CCGTTTCTCCGCCCGAAAATACCCCCTACCGCCCTGCCGAAACCGCACACATCGATTTCCGCAAAGGTTCGGGCGGCAGC
GGCATTGTCGAACTGGATATTTCGGGATTCGACGGCACGCCCGACATCAAAGAACAGCGCGACCGCGTCATCATTACCTT
GAACAACCACGCCATGCCCACACAAGCCCAACGCAGTCTCGATGTCGGCGACTTCAACACCCCCGTCCGCAACATCACCC
TGAAGCGCATGGGCAACGCCACCCGGCTGACCATTCTCAACAACGGCTTATGGGAAATGAAAACCCGTTCCGCAGCAGGC
CGTTACAGCTTTGAAATCCGCCCGAAATCAGCCGAAGCATTTACAGACGGCACAAACAGCCTCACCGCCAAATCCTTCAA
AGGCCGCAAGTTGTCACTGGACTTCCAAAACATCGAAGTCCGCACCATCTTGCAGATTCTCGCCAAAGAATCCGGCATGA
ACATCATCGCCAGCGATTCCGTAGGCGGCAAAATGACCCTGTCGCTCAAAGACGTACCTTGGGATCAGGCCTTGGATTTG
GTGATGCAGGCGCGCAATCTCGATATGCGCCGCCAAGGCAACATCATCAACATCGCCCCGCGTGAAGAACTGCTGGCAAA
AGACAAAGCCTTTTTGCAGGCAGAAAAAGAAATTGCCGAATTGGGGCCGCTGTATTCGCAAACCTTCCAACTGAAATATA
AAAACGTCGAAGAGTTCCGCAAAATCCTGCGTTTGGACGAACGCAGCAGTAATAGCAGCAGCGGCGGAAACCGCAACACC
CTGCTCAGTCCGCGCGGCAGCGCACTCATCGATTCAGGCACCAACACCCTGATTGTTACCGACACACGCAGCGTTATCGA
AAAATTCCGCAAACTGATCGACGAATTAGACGTAGCCGCCCGCCAAGTCATGGTCGAAGCACGCATTGTCGAAGCAGAAG
ACGGTTTTTCACGCGATTTGGGCTTGAAATTCGGCTACTCCGGCAACCGCTCCGGCGGCAATACCGCTTGGGGCAGCACA
TGGAACGGCGGCACGGCTTTAGGCAGCAGCCCCAACATCAACCTGCCCGTTGCCGCCGCTACATCTTCCGTAGCACTGGT
GCGCTCGCTGTCATCAGGCGCATTAGGATTGGAGCTTTCCGCTTCCGAAGCGCAGAAAAAAACCAAAACCATCTCCAATC
CGCGCGTGCTGACCCAAGACCGTCAGGAAGCCTCTATCGAATCGGGCCAAGAAATCCCCTATCAAGAATCCAGCTCCAGC
GGCGCGACTTCCGTTACCTTTAAAAAAGCCGTACTCGGATTGACCGTTACCCCGAACATCACGCCCGACGGCCAGATTAT
CATGAACGTGAAAATCAACCGCGACACCCCTGTTGCCTGCCAAACAGACGGCGTGCAAACCCTCTGTATCAGCACCAAAA
ACCTGACCACGCAAGCCATGGTCGAAGACGGCGGCACCCTGATTATCGGCGGCATTTACGAAGAAAGCAGCGGCAACAGC
ATCAACAAAGTACCGCTTTTGGGCGATATTCCCGTTATCGGCAACCTGTTCAAATCACGCGCCCGTTCCGAAGAGCGCAA
AGAGCTGCTGGTTTTCATTACCCCGAGGATTATGGACGGACAAGGCAACAACTTACGCTACTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(367-442)

Bacterial type II and III secretion system protein (Secretin)

(522-679)

AMIN domain (AMIN)

(40-116)

Secretin and TonB N terminus short domain (STN)

(293-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MRN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

61.367

100

0.64
  pilQ Neisseria meningitidis MC58

66.058

79.767

0.527
  pilQ Neisseria meningitidis M1080

65.876

79.767

0.525

Multiple sequence alignment