Detailed information NTG1120199

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EL111_RS02125
• Genome accession: NZ_LR134287
• Coordinates: 443066..443926 (-)
• Length: 286 a.a.
• NCBI ID: WP_123795648.1
• Uniprot ID: -
• Organism: Neisseria animalis strain NCTC10212
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 438066..448926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL111_RS02095 (NCTC10212_00423)	-	438201..439043 (-)	843	WP_123795654.1	PhzF family phenazine biosynthesis protein	-
EL111_RS02100 (NCTC10212_00424)	aat	439064..439819 (-)	756	WP_123795653.1	leucyl/phenylalanyl-tRNA--protein transferase	-
EL111_RS02105 (NCTC10212_00425)	lspA	439988..440485 (+)	498	WP_123795652.1	signal peptidase II	-
EL111_RS02110 (NCTC10212_00426)	ispH	440578..441546 (+)	969	WP_123795651.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
EL111_RS10465	-	441645..441818 (-)	174	WP_162842984.1	hypothetical protein	-
EL111_RS02115 (NCTC10212_00427)	yacG	442173..442361 (-)	189	WP_197717779.1	DNA gyrase inhibitor YacG	-
EL111_RS02120 (NCTC10212_00428)	coaE	442413..443033 (-)	621	WP_123795649.1	dephospho-CoA kinase	-
EL111_RS02125 (NCTC10212_00429)	pilD	443066..443926 (-)	861	WP_123795648.1	prepilin peptidase	Machinery gene
EL111_RS02130 (NCTC10212_00430)	pilG	443928..445172 (-)	1245	WP_269471079.1	type II secretion system F family protein	Machinery gene
EL111_RS02135 (NCTC10212_00431)	pilF	445181..446860 (-)	1680	WP_123795647.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EL111_RS02140 (NCTC10212_00432)	-	447416..447922 (-)	507	WP_123795646.1	pilin	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31107.92 Da
• Isoelectric Point: 7.3034

>NTDB_id=1120199 EL111_RS02125 WP_123795648.1 443066..443926(-) (pilD) [Neisseria animalis strain NCTC10212]
MWTFDIYTPFIVPAAALLGLLFGSFLNVVIHRIPIMMERDWTLFAKEHLGLKPSAKEQQPFNLMKPDSHCPECGEKIKAR
HNIPVISYLLLGGKCSLCRTHISLRYPLVELLTAAAFAVVAWQYGASWITLGGWVFTAFLIALAFIDADTHYLPDSLTLP
LVWLGLLFNFADGMVALQSAVLGAVCGYACLWLLCAAYRLLTGQTGMGNGDFKLLAALGAWLGVGVLPVLVFAASLIGIM
GAVLTKTAKGQAFAFGPSLALAGWIIFIAYEPLQQLTDWWLNASGL

Nucleotide

• Length: 861 bp

>NTDB_id=1120199 EL111_RS02125 WP_123795648.1 443066..443926(-) (pilD) [Neisseria animalis strain NCTC10212]
ATGTGGACATTCGATATCTATACGCCGTTTATCGTACCTGCCGCCGCCCTGCTCGGTCTGCTGTTTGGCAGCTTTTTAAA
CGTGGTTATCCACCGCATACCCATCATGATGGAGCGCGATTGGACGCTGTTTGCCAAAGAGCATCTCGGCCTGAAGCCGT
CTGCAAAAGAGCAGCAGCCGTTTAATCTGATGAAGCCGGATTCGCATTGCCCCGAATGCGGAGAAAAAATCAAAGCACGG
CACAATATTCCCGTCATCAGCTATCTGCTGCTCGGTGGCAAATGCAGCCTATGCCGTACGCACATCTCCCTCCGCTATCC
GCTGGTCGAACTGCTGACCGCTGCGGCGTTTGCCGTCGTAGCATGGCAATACGGAGCAAGCTGGATTACGCTCGGCGGCT
GGGTATTCACCGCTTTTCTCATTGCACTGGCCTTCATTGATGCCGATACGCACTATCTGCCCGATTCGCTTACCCTGCCG
CTGGTTTGGCTGGGGCTGCTGTTTAATTTTGCAGACGGCATGGTAGCGCTGCAATCCGCGGTACTCGGTGCTGTATGCGG
CTATGCCTGCCTGTGGTTGCTCTGCGCCGCATACAGATTGCTGACCGGCCAAACCGGTATGGGCAACGGCGATTTCAAAC
TGCTCGCCGCATTGGGCGCATGGCTGGGGGTCGGCGTATTGCCCGTGTTGGTGTTTGCCGCCTCGCTCATCGGCATTATG
GGCGCGGTGTTAACGAAAACCGCCAAAGGGCAGGCTTTCGCCTTCGGCCCCAGTCTGGCATTGGCTGGCTGGATTATCTT
CATTGCCTACGAACCGCTGCAACAGCTTACCGACTGGTGGCTGAATGCCTCGGGGTTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	64.539	98.601	0.636
pilD	Vibrio campbellii strain DS40M4	44.097	100	0.444
pilD	Vibrio cholerae strain A1552	43.158	99.65	0.43
pilD	Acinetobacter baumannii D1279779	47.471	89.86	0.427
pilD	Acinetobacter nosocomialis M2	47.082	89.86	0.423