Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   EL100_RS00960 Genome accession   NZ_LR134285
Coordinates   186291..186950 (+) Length   219 a.a.
NCBI ID   WP_126403892.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181291..191950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS00925 (NCTC3168_00189) - 181439..181705 (-) 267 WP_126403896.1 DUF3165 family protein -
  EL100_RS00930 (NCTC3168_00190) typA 181728..183575 (-) 1848 WP_126403895.1 translational GTPase TypA -
  EL100_RS00935 (NCTC3168_00191) - 183813..184538 (+) 726 WP_126403894.1 16S rRNA pseudouridine(516) synthase -
  EL100_RS00940 (NCTC3168_00192) - 184576..184809 (-) 234 WP_006597131.1 hypothetical protein -
  EL100_RS00945 (NCTC3168_00193) - 184884..185228 (-) 345 WP_048687808.1 rhodanese-like domain-containing protein -
  EL100_RS00950 (NCTC3168_00194) - 185267..185485 (-) 219 WP_126403893.1 YqgQ family protein -
  EL100_RS00955 (NCTC3168_00195) - 185610..186137 (-) 528 WP_006596795.1 Dps family protein -
  EL100_RS00960 (NCTC3168_00196) cclA/cilC 186291..186950 (+) 660 WP_126403892.1 prepilin peptidase Machinery gene
  EL100_RS00965 (NCTC3168_00197) trpB 186957..188144 (-) 1188 WP_126403891.1 tryptophan synthase subunit beta -
  EL100_RS00970 (NCTC3168_00199) - 188582..189115 (-) 534 WP_185946464.1 VanZ family protein -
  EL100_RS00975 (NCTC3168_00200) rlmN 189093..190181 (-) 1089 WP_126403890.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  EL100_RS00980 (NCTC3168_00201) - 190200..190778 (-) 579 WP_126403889.1 YutD family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24771.87 Da        Isoelectric Point: 7.5346

>NTDB_id=1120140 EL100_RS00960 WP_126403892.1 186291..186950(+) (cclA/cilC) [Streptococcus australis strain NCTC3168]
MINFYFFTVGACMASFLGLVIDRFPESSIIHPRSHCDQCQQTLGVLDLIPILSQVLFRFRCRYCQSPLPYWYTLFEAWSG
LLFLLCYQGLLPIPHLLVLLGSCVLAIYDLRSMEYPLLLWLVLHALCLFFTSPTLLMGVFLFLGVLSAVYSIGIGAGDFL
LLATFSLTLSAVQVLLVMQGASLIGLLTFLFKKEKDRIPFVPCLFLSYHALLFFTILSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1120140 EL100_RS00960 WP_126403892.1 186291..186950(+) (cclA/cilC) [Streptococcus australis strain NCTC3168]
ATGATCAACTTCTATTTTTTTACAGTCGGCGCCTGTATGGCCTCCTTTTTAGGTCTCGTCATCGACCGTTTTCCAGAAAG
CTCCATCATTCATCCAAGAAGCCATTGCGACCAATGTCAACAGACCTTGGGAGTTCTAGACTTGATTCCTATTCTTTCGC
AAGTTCTTTTTCGATTCCGTTGTCGCTACTGCCAGAGTCCTCTGCCTTATTGGTATACCCTTTTTGAAGCCTGGAGTGGT
CTCCTCTTTTTGCTGTGCTATCAGGGTCTTCTTCCCATTCCTCATCTCCTGGTTCTTCTTGGCAGTTGCGTTTTAGCCAT
CTATGATTTGCGATCCATGGAGTACCCGCTCCTCCTCTGGCTAGTGCTCCACGCTCTTTGCCTGTTTTTCACCAGTCCTA
CCCTCTTGATGGGAGTCTTTCTCTTCTTAGGAGTCCTGTCAGCTGTTTACTCCATCGGCATTGGAGCAGGGGATTTTCTC
TTACTGGCTACTTTTTCTTTGACCCTCTCGGCCGTCCAAGTCCTCCTAGTCATGCAAGGGGCTTCCCTCATCGGTCTCCT
TACCTTTCTCTTTAAAAAAGAAAAAGACCGGATTCCTTTTGTTCCCTGTCTTTTTCTGAGTTATCATGCTTTACTGTTTT
TTACAATTTTAAGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50.691

99.087

0.502
  cclA/cilC Streptococcus pneumoniae Rx1

50.691

99.087

0.502
  cclA/cilC Streptococcus pneumoniae D39

50.691

99.087

0.502
  cclA/cilC Streptococcus pneumoniae R6

50.691

99.087

0.502
  cclA/cilC Streptococcus mitis NCTC 12261

50.23

99.087

0.498
  cclA/cilC Streptococcus pneumoniae TIGR4

50.23

99.087

0.498

Multiple sequence alignment