Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G293_RS00270 Genome accession   NZ_CP004021
Coordinates   57006..57485 (-) Length   159 a.a.
NCBI ID   WP_047263814.1    Uniprot ID   A0A0G3I1G7
Organism   Candidatus Liberibacter africanus PTSAPSY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 21731..57485 57006..57485 within 0


Gene organization within MGE regions


Location: 21731..57485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G293_RS00115 (G293_00120) - 21731..22420 (-) 690 WP_047263790.1 orotate phosphoribosyltransferase -
  G293_RS00120 (G293_00125) pyrC 22505..23554 (-) 1050 WP_047263791.1 dihydroorotase -
  G293_RS00125 (G293_00130) - 23927..24913 (-) 987 WP_052774991.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  G293_RS00130 (G293_00135) - 25534..26181 (-) 648 WP_047263792.1 hypothetical protein -
  G293_RS00135 (G293_00140) - 26536..26967 (-) 432 WP_244464395.1 hypothetical protein -
  G293_RS05830 - 27326..28051 (-) 726 WP_244464396.1 tail fiber domain-containing protein -
  G293_RS05835 - 28114..28392 (-) 279 WP_244464397.1 hypothetical protein -
  G293_RS00145 (G293_00155) - 28520..29686 (-) 1167 WP_047263793.1 tail fiber domain-containing protein -
  G293_RS00150 (G293_00160) - 29892..30359 (-) 468 WP_200897311.1 hypothetical protein -
  G293_RS05605 - 30374..31453 (-) 1080 WP_158402207.1 hypothetical protein -
  G293_RS05840 - 31380..32030 (-) 651 WP_244464398.1 hypothetical protein -
  G293_RS00165 (G293_00175) - 32153..32734 (-) 582 WP_047263796.1 hypothetical protein -
  G293_RS00170 (G293_00180) - 32731..33306 (-) 576 WP_047263797.1 hypothetical protein -
  G293_RS05845 (G293_00185) - 33306..33626 (-) 321 WP_047263798.1 hypothetical protein -
  G293_RS00180 - 33640..34636 (-) 997 Protein_37 DUF5309 domain-containing protein -
  G293_RS05850 (G293_00205) - 34789..35865 (-) 1077 WP_244464399.1 hypothetical protein -
  G293_RS00190 (G293_00210) - 35961..37892 (-) 1932 WP_047263799.1 hypothetical protein -
  G293_RS00195 (G293_00215) - 38072..39439 (-) 1368 WP_083965928.1 terminase family protein -
  G293_RS05510 (G293_00220) - 39396..39767 (-) 372 WP_244464400.1 hypothetical protein -
  G293_RS00200 (G293_00225) - 41560..41814 (+) 255 WP_047263801.1 helix-turn-helix transcriptional regulator -
  G293_RS00205 (G293_00230) - 42797..44221 (+) 1425 WP_047263802.1 DnaB-like helicase C-terminal domain-containing protein -
  G293_RS00210 (G293_00235) - 44224..44889 (+) 666 WP_047263803.1 YdaU family protein -
  G293_RS00215 (G293_00240) - 44944..45513 (+) 570 WP_047263804.1 hypothetical protein -
  G293_RS05395 (G293_00250) - 46612..47355 (-) 744 WP_052774993.1 hypothetical protein -
  G293_RS00230 (G293_00255) - 47614..48147 (-) 534 WP_047263806.1 helix-turn-helix transcriptional regulator -
  G293_RS00235 (G293_00265) - 49516..49746 (+) 231 WP_047263807.1 hypothetical protein -
  G293_RS00240 - 50288..50488 (+) 201 WP_047263808.1 hypothetical protein -
  G293_RS06035 (G293_00270) - 50589..51680 (+) 1092 Protein_50 AAA family ATPase -
  G293_RS06040 (G293_00275) - 51693..52445 (+) 753 WP_342027553.1 TOPRIM nucleotidyl transferase/hydrolase domain-containing protein -
  G293_RS00255 (G293_00280) - 53009..53350 (-) 342 WP_047263811.1 hypothetical protein -
  G293_RS00265 (G293_00290) gyrA 54146..56911 (-) 2766 WP_047263813.1 DNA gyrase subunit A -
  G293_RS00270 (G293_00295) ssb 57006..57485 (-) 480 WP_047263814.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18263.28 Da        Isoelectric Point: 6.1103

>NTDB_id=112012 G293_RS00270 WP_047263814.1 57006..57485(-) (ssb) [Candidatus Liberibacter africanus PTSAPSY]
MVASVNKVILIGHLGADPDVRHTQDGRKIVNLRIATSESWKDRTTNERREKTEWHSVVVFVEELCKIVEQYLRKGSKVYV
EGSLQTRKWQDQSGNNRYTTEIIMRTMVMLDSRKDSLQGNEHSNNNSNSNLKENVVEDRYSSSQGGSVFSDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=112012 G293_RS00270 WP_047263814.1 57006..57485(-) (ssb) [Candidatus Liberibacter africanus PTSAPSY]
ATGGTAGCAAGTGTCAACAAGGTTATTTTGATAGGACATCTAGGAGCAGATCCAGATGTTAGGCATACGCAAGATGGGCG
TAAAATAGTTAATCTTCGTATTGCTACTTCTGAAAGCTGGAAAGATCGTACTACAAATGAACGTCGTGAAAAAACGGAAT
GGCACTCTGTTGTTGTTTTCGTTGAAGAGCTTTGTAAAATTGTTGAGCAATATCTTCGTAAAGGCTCTAAAGTGTATGTA
GAAGGGTCTCTTCAAACTCGAAAATGGCAAGATCAGTCTGGTAATAATCGTTACACAACTGAGATTATTATGCGTACCAT
GGTTATGTTAGATAGTCGTAAAGATTCCCTGCAAGGAAATGAACATAGTAATAATAATAGTAATAGTAATTTAAAGGAAA
ATGTTGTTGAAGATCGGTATTCGTCTTCGCAAGGAGGGAGTGTGTTCTCTGATGAGCTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3I1G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.304

100

0.516
  ssb Vibrio cholerae strain A1552

42.373

100

0.472
  ssb Neisseria meningitidis MC58

35.227

100

0.39
  ssb Neisseria gonorrhoeae MS11

35.227

100

0.39

Multiple sequence alignment