Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL076_RS08920 Genome accession   NZ_LR134275
Coordinates   1773776..1775746 (-) Length   656 a.a.
NCBI ID   WP_003092023.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768776..1780746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS08900 (NCTC12167_01756) - 1769066..1770265 (-) 1200 WP_126430055.1 argininosuccinate synthase -
  EL076_RS08905 - 1770880..1771630 (+) 751 Protein_1672 IS30 family transposase -
  EL076_RS08915 (NCTC12167_01758) gltX 1772140..1773594 (-) 1455 WP_003091903.1 glutamate--tRNA ligase -
  EL076_RS08920 (NCTC12167_01759) amiA 1773776..1775746 (-) 1971 WP_003092023.1 peptide ABC transporter substrate-binding protein Regulator
  EL076_RS08925 (NCTC12167_01760) rplA 1775927..1776616 (-) 690 WP_037621255.1 50S ribosomal protein L1 -
  EL076_RS08930 (NCTC12167_01761) rplK 1776716..1777141 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  EL076_RS08935 (NCTC12167_01762) - 1777313..1777666 (+) 354 WP_003095949.1 DUF3397 domain-containing protein -
  EL076_RS08940 (NCTC12167_01763) - 1777761..1778258 (-) 498 WP_003092048.1 carbonic anhydrase -
  EL076_RS08945 (NCTC12167_01764) - 1778409..1779104 (-) 696 WP_064520018.1 TIGR00266 family protein -
  EL076_RS08950 (NCTC12167_01765) radA 1779193..1780554 (-) 1362 WP_126430057.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72995.00 Da        Isoelectric Point: 5.2528

>NTDB_id=1119910 EL076_RS08920 WP_003092023.1 1773776..1775746(-) (amiA) [Streptococcus vestibularis strain NCTC12167]
MKKSKVFLLVAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNAGFLKSKGKDFGKSTDPTSILYNGPYLLKALTTKSSIEFTKNENYWDKD
NVYFDNIKLTYDDGSDQESLERKFTDGVYTLARLFPNSSNYSKVSKKYKDNIYTTQPAASVEGVGINIDRQTYNNTSKEN
DQQKSSTKAALLNKDFRQSLGFAIDRTNYAAQLNGKESANTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQTSKIFVNQVQSLKQSIEATLGKENVVIDIHQLSADDFYN
ITYYASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTSSENTKSFMGYDNPNSQAVEKVGLKEYDQLVEDASKETTDLT
RRYEKYAKAQAWLTDSALYLPTTAYSGAATVVSRIQPFSGAYAQAGDKGSTYYFKYIKSQDDIVTKKQYDSAYKDWLKEK
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1119910 EL076_RS08920 WP_003092023.1 1773776..1775746(-) (amiA) [Streptococcus vestibularis strain NCTC12167]
ATGAAAAAGAGTAAGGTATTTTTACTGGTAGCCGTAGGCCTGTTATCTGTAGGTGTATTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGGAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ATATGACAACAGCCGTTAGTAATGGTGTTGATGGTTTGTTTGAAAATGACCAATACGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACTTATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
CGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTCTCAAATGTAGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGTCAACCAGAACCTTACTGGAACTCAAAATTGACTTACTCTGTCAC
TTGGCCTGTTAACGCAGGATTTTTGAAATCTAAAGGAAAAGATTTTGGTAAGTCAACGGATCCAACGTCTATTCTTTATA
ACGGACCATACCTTCTTAAAGCTTTGACAACTAAATCGTCTATTGAGTTCACCAAGAATGAAAATTATTGGGATAAGGAT
AATGTCTACTTTGACAATATCAAATTAACTTATGATGATGGATCAGATCAAGAGTCTTTGGAACGTAAGTTCACTGATGG
TGTCTACACATTAGCTCGACTCTTCCCTAATAGCTCAAATTATTCTAAGGTTTCTAAAAAGTATAAAGATAATATCTATA
CTACTCAACCAGCAGCATCAGTAGAGGGGGTTGGTATTAATATTGATCGCCAAACTTACAATAATACCTCTAAAGAAAAT
GACCAACAGAAATCATCAACTAAAGCAGCACTTCTTAATAAGGATTTCCGTCAATCATTAGGATTTGCCATTGATCGTAC
AAATTATGCGGCTCAGTTGAATGGTAAAGAAAGTGCTAATACAGCTGTTCGTAATATCTTTGTTAAACCAGACTTTGTTC
AGGCAGATGGTAAAGATTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAGGATGGTCTTTACAATCCAGAAAAAGCTAAGGCTGAGTTCGCGAAAGCTAAGGAAGCTCTTCAAGCAGA
AGGAGTTCAGTTCCCAATTCATTTGGACGTTCCAGTAAACCAAACAAGTAAAATTTTTGTGAATCAAGTGCAATCTCTCA
AACAGTCTATTGAAGCTACACTTGGAAAAGAGAATGTTGTAATTGATATCCATCAATTGTCAGCTGACGATTTCTACAAT
ATTACTTACTATGCTTCGAATGCAGCAGCAGAGGATTGGGACTTGTCGGTTGGTGTTGCTTGGGAGCCTGATTACCTCGA
TCCATCTACATATCTTGATGTTTTGAAAACGACTAGTAGCGAAAACACTAAGTCCTTTATGGGTTACGACAATCCAAATA
GTCAAGCTGTGGAAAAAGTAGGTCTTAAAGAATATGACCAATTAGTTGAAGATGCTTCTAAGGAAACTACAGATTTGACA
CGTCGTTATGAAAAATATGCTAAAGCTCAAGCATGGTTGACAGATAGTGCCCTCTATCTTCCAACTACCGCTTACAGTGG
TGCGGCAACGGTAGTTTCTCGCATCCAGCCATTCTCAGGAGCTTACGCTCAAGCTGGTGATAAAGGTTCTACTTACTACT
TCAAGTATATTAAATCTCAAGATGATATTGTAACTAAGAAACAATATGATTCAGCTTATAAAGATTGGCTTAAAGAGAAA
GCAAAATCTAATGACAAAGCTCAAAAAGATCTTGCAAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.902

100

0.689
  amiA3 Streptococcus thermophilus LMD-9

68.037

100

0.681
  amiA3 Streptococcus thermophilus LMG 18311

67.58

100

0.677

Multiple sequence alignment