Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL076_RS08950 Genome accession   NZ_LR134275
Coordinates   1779193..1780554 (-) Length   453 a.a.
NCBI ID   WP_126430057.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1774193..1785554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS08925 (NCTC12167_01760) rplA 1775927..1776616 (-) 690 WP_037621255.1 50S ribosomal protein L1 -
  EL076_RS08930 (NCTC12167_01761) rplK 1776716..1777141 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  EL076_RS08935 (NCTC12167_01762) - 1777313..1777666 (+) 354 WP_003095949.1 DUF3397 domain-containing protein -
  EL076_RS08940 (NCTC12167_01763) - 1777761..1778258 (-) 498 WP_003092048.1 carbonic anhydrase -
  EL076_RS08945 (NCTC12167_01764) - 1778409..1779104 (-) 696 WP_064520018.1 TIGR00266 family protein -
  EL076_RS08950 (NCTC12167_01765) radA 1779193..1780554 (-) 1362 WP_126430057.1 DNA repair protein RadA Machinery gene
  EL076_RS08955 (NCTC12167_01766) - 1780733..1781179 (-) 447 WP_064520016.1 dUTP diphosphatase -
  EL076_RS08960 (NCTC12167_01767) - 1781394..1781996 (+) 603 WP_003092087.1 NADPH-dependent FMN reductase -
  EL076_RS08965 (NCTC12167_01768) - 1782015..1783265 (+) 1251 WP_126430059.1 NAD(P)H-dependent oxidoreductase -
  EL076_RS08970 (NCTC12167_01769) - 1783381..1784172 (+) 792 WP_126430061.1 formate/nitrite transporter family protein -
  EL076_RS08975 (NCTC12167_01770) - 1784181..1784741 (+) 561 WP_126430063.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49505.94 Da        Isoelectric Point: 6.6528

>NTDB_id=1119911 EL076_RS08950 WP_126430057.1 1779193..1780554(-) (radA) [Streptococcus vestibularis strain NCTC12167]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMIPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAISSSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1119911 EL076_RS08950 WP_126430057.1 1779193..1780554(-) (radA) [Streptococcus vestibularis strain NCTC12167]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGACGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAATTACGCCCGCATAAAAACTGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACGGTCCTCTATGTTTCTGGGGAAGAATCAGCCGAGCAAATTAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACTAATATGCAAGCAGTACGTAGCCAAGTCGAG
GCTATCAAACCTGATTTCCTTATTATCGACTCAATTCAGACCATCATGATCCCAGAGATTTCTGGCGTTCAAGGATCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACGGTGCTCTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGCGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAAATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCTATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAATGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCTCCTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACGACGGTAGGAGAAGTACTCAAAAAAGTTTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment