Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LOA_RS01875 | Genome accession | NZ_CP004006 |
| Coordinates | 376218..376673 (-) | Length | 151 a.a. |
| NCBI ID | WP_025384900.1 | Uniprot ID | W0BBC7 |
| Organism | Legionella oakridgensis ATCC 33761 = DSM 21215 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 371218..381673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOA_RS01840 (Loa_00409) | rplO | 371344..371778 (+) | 435 | WP_025384893.1 | 50S ribosomal protein L15 | - |
| LOA_RS01845 (Loa_00410) | secY | 371781..373112 (+) | 1332 | WP_025384894.1 | preprotein translocase subunit SecY | - |
| LOA_RS14065 (Loa_00411) | rpmJ | 373131..373244 (+) | 114 | WP_081724921.1 | 50S ribosomal protein L36 | - |
| LOA_RS01850 (Loa_00413) | rpsM | 373324..373680 (+) | 357 | WP_025384895.1 | 30S ribosomal protein S13 | - |
| LOA_RS01855 (Loa_00414) | rpsK | 373755..374099 (+) | 345 | WP_025384896.1 | 30S ribosomal protein S11 | - |
| LOA_RS01860 (Loa_00415) | rpsD | 374117..374737 (+) | 621 | WP_025384897.1 | 30S ribosomal protein S4 | - |
| LOA_RS01865 (Loa_00416) | - | 374756..375748 (+) | 993 | WP_025384898.1 | DNA-directed RNA polymerase subunit alpha | - |
| LOA_RS01870 (Loa_00417) | rplQ | 375766..376149 (+) | 384 | WP_025384899.1 | 50S ribosomal protein L17 | - |
| LOA_RS01875 (Loa_00418) | ssb | 376218..376673 (-) | 456 | WP_025384900.1 | single-stranded DNA-binding protein | Machinery gene |
| LOA_RS01880 (Loa_00419) | - | 376782..378137 (-) | 1356 | WP_025384901.1 | MFS transporter | - |
| LOA_RS01885 (Loa_00420) | fabL | 378416..379171 (+) | 756 | WP_025384902.1 | enoyl-[acyl-carrier-protein] reductase FabL | - |
| LOA_RS01890 (Loa_00421) | - | 379327..380253 (+) | 927 | WP_025384903.1 | cation transporter | - |
| LOA_RS01895 (Loa_00422) | - | 380447..380860 (+) | 414 | WP_025384904.1 | acyl carrier protein | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16988.88 Da Isoelectric Point: 4.8501
>NTDB_id=111988 LOA_RS01875 WP_025384900.1 376218..376673(-) (ssb) [Legionella oakridgensis ATCC 33761 = DSM 21215]
MARGINKVILIGNVGVDPEVRYMPNGNAVTTLSIATSETWKDKQSGDKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYVE
GSLRTRKWQDQQGQERYTTEIVASDIQMLDGKGQANYPEEQSMSSQNTKTAKPSQGVAQDAFEELDDDIPF
MARGINKVILIGNVGVDPEVRYMPNGNAVTTLSIATSETWKDKQSGDKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYVE
GSLRTRKWQDQQGQERYTTEIVASDIQMLDGKGQANYPEEQSMSSQNTKTAKPSQGVAQDAFEELDDDIPF
Nucleotide
Download Length: 456 bp
>NTDB_id=111988 LOA_RS01875 WP_025384900.1 376218..376673(-) (ssb) [Legionella oakridgensis ATCC 33761 = DSM 21215]
ATGGCCCGCGGTATTAATAAAGTAATACTCATCGGCAATGTTGGCGTTGATCCAGAAGTACGATACATGCCTAATGGCAA
CGCCGTTACAACGCTATCCATTGCAACCAGTGAAACTTGGAAAGACAAACAAAGCGGTGATAAACAGGAACGAACCGAAT
GGCATCGTGTCGTATGTTTTAACCGGCTTGGTGAAATTGCTGGAGAATATGTTCGCAAAGGTTCGAAACTTTATGTTGAA
GGAAGTTTACGTACGAGAAAATGGCAAGATCAACAAGGACAAGAACGCTACACAACGGAGATAGTTGCTTCTGACATTCA
AATGCTTGATGGCAAAGGTCAAGCAAATTACCCAGAGGAGCAATCCATGTCATCCCAGAACACCAAGACCGCCAAACCCT
CACAAGGTGTCGCTCAAGATGCTTTTGAAGAGTTAGATGACGATATTCCTTTTTAA
ATGGCCCGCGGTATTAATAAAGTAATACTCATCGGCAATGTTGGCGTTGATCCAGAAGTACGATACATGCCTAATGGCAA
CGCCGTTACAACGCTATCCATTGCAACCAGTGAAACTTGGAAAGACAAACAAAGCGGTGATAAACAGGAACGAACCGAAT
GGCATCGTGTCGTATGTTTTAACCGGCTTGGTGAAATTGCTGGAGAATATGTTCGCAAAGGTTCGAAACTTTATGTTGAA
GGAAGTTTACGTACGAGAAAATGGCAAGATCAACAAGGACAAGAACGCTACACAACGGAGATAGTTGCTTCTGACATTCA
AATGCTTGATGGCAAAGGTCAAGCAAATTACCCAGAGGAGCAATCCATGTCATCCCAGAACACCAAGACCGCCAAACCCT
CACAAGGTGTCGCTCAAGATGCTTTTGAAGAGTTAGATGACGATATTCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.714 |
100 |
0.576 |
| ssb | Glaesserella parasuis strain SC1401 |
46.629 |
100 |
0.55 |
| ssb | Neisseria meningitidis MC58 |
42.197 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
42.197 |
100 |
0.483 |