Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL077_RS01810 | Genome accession | NZ_LR134273 |
| Coordinates | 353212..353700 (+) | Length | 162 a.a. |
| NCBI ID | WP_126436329.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. equi strain NCTC12091 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 348212..358700
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL077_RS01780 (NCTC12091_00359) | - | 348782..349048 (-) | 267 | WP_043040081.1 | hypothetical protein | - |
| EL077_RS01785 (NCTC12091_00360) | - | 349290..349574 (-) | 285 | WP_021320372.1 | hypothetical protein | - |
| EL077_RS01795 (NCTC12091_00362) | mutY | 350374..351522 (-) | 1149 | WP_126436327.1 | A/G-specific adenine glycosylase | - |
| EL077_RS01800 (NCTC12091_00363) | - | 351611..351836 (+) | 226 | Protein_322 | HicB family protein | - |
| EL077_RS01805 (NCTC12091_00365) | rpsF | 352903..353193 (+) | 291 | WP_012514997.1 | 30S ribosomal protein S6 | - |
| EL077_RS01810 (NCTC12091_00366) | ssbA | 353212..353700 (+) | 489 | WP_126436329.1 | single-stranded DNA-binding protein | Machinery gene |
| EL077_RS01815 (NCTC12091_00367) | rpsR | 353860..354099 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| EL077_RS01820 (NCTC12091_00368) | - | 354364..355014 (-) | 651 | WP_111692189.1 | DUF1129 domain-containing protein | - |
| EL077_RS01825 (NCTC12091_00369) | - | 355266..356210 (-) | 945 | WP_014622324.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 17795.63 Da Isoelectric Point: 4.9008
>NTDB_id=1119744 EL077_RS01810 WP_126436329.1 353212..353700(+) (ssbA) [Streptococcus equi subsp. equi strain NCTC12091]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPATNSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPATNSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=1119744 EL077_RS01810 WP_126436329.1 353212..353700(+) (ssbA) [Streptococcus equi subsp. equi strain NCTC12091]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTCAATGGCTCACCGGCAACCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGATATTTCAGATGACGATCTT
CCATTTTAA
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTCAATGGCTCACCGGCAACCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGATATTTCAGATGACGATCTT
CCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.322 |
100 |
0.605 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.31 |
100 |
0.605 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.464 |
69.136 |
0.377 |
| ssb | Glaesserella parasuis strain SC1401 |
32.065 |
100 |
0.364 |