Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL082_RS11505 Genome accession   NZ_LR134269
Coordinates   2354685..2355200 (-) Length   171 a.a.
NCBI ID   WP_002466536.1    Uniprot ID   A0A2V3ZFL8
Organism   Staphylococcus warneri strain NCTC11044     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2343762..2356968 2354685..2355200 within 0


Gene organization within MGE regions


Location: 2343762..2356968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL082_RS11435 (NCTC11044_02361) - 2343762..2344247 (-) 486 WP_049416686.1 terminase small subunit -
  EL082_RS11440 (NCTC11044_02362) - 2344304..2344606 (-) 303 WP_049416685.1 hypothetical protein -
  EL082_RS11445 (NCTC11044_02363) - 2344599..2345195 (-) 597 WP_049416683.1 pathogenicity island protein -
  EL082_RS11450 (NCTC11044_02364) - 2345209..2345970 (-) 762 WP_049416681.1 hypothetical protein -
  EL082_RS11455 (NCTC11044_02365) - 2345982..2346326 (-) 345 WP_049416679.1 hypothetical protein -
  EL082_RS11460 (NCTC11044_02366) - 2346612..2347253 (-) 642 WP_049416676.1 pathogenicity island protein -
  EL082_RS11465 (NCTC11044_02367) - 2347250..2347600 (-) 351 WP_049416674.1 hypothetical protein -
  EL082_RS11470 (NCTC11044_02368) - 2347872..2350124 (-) 2253 Protein_2225 phage/plasmid primase, P4 family -
  EL082_RS11475 (NCTC11044_02369) - 2350221..2350562 (-) 342 WP_049416672.1 hypothetical protein -
  EL082_RS11480 (NCTC11044_02370) - 2350564..2350923 (-) 360 WP_049416671.1 hypothetical protein -
  EL082_RS11485 (NCTC11044_02371) - 2350952..2351488 (+) 537 WP_049416668.1 hypothetical protein -
  EL082_RS11490 (NCTC11044_02372) - 2351556..2352944 (+) 1389 WP_049416667.1 SAP domain-containing protein -
  EL082_RS11495 (NCTC11044_02373) - 2352958..2354181 (+) 1224 WP_049416665.1 tyrosine-type recombinase/integrase -
  EL082_RS11500 (NCTC11044_02374) rpsR 2354398..2354640 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  EL082_RS11505 (NCTC11044_02375) ssbA 2354685..2355200 (-) 516 WP_002466536.1 single-stranded DNA-binding protein Machinery gene
  EL082_RS11510 (NCTC11044_02376) rpsF 2355222..2355518 (-) 297 WP_002451521.1 30S ribosomal protein S6 -
  EL082_RS11515 (NCTC11044_02377) - 2355894..2356715 (+) 822 WP_002466546.1 GH25 family lysozyme -
  EL082_RS11520 (NCTC11044_02378) - 2356777..2356968 (+) 192 WP_002451523.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18856.42 Da        Isoelectric Point: 4.7410

>NTDB_id=1119663 EL082_RS11505 WP_002466536.1 2354685..2355200(-) (ssbA) [Staphylococcus warneri strain NCTC11044]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1119663 EL082_RS11505 WP_002466536.1 2354685..2355200(-) (ssbA) [Staphylococcus warneri strain NCTC11044]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V3ZFL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

36.313

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374

Multiple sequence alignment