Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   EL081_RS02865 Genome accession   NZ_LR134266
Coordinates   523652..524311 (-) Length   219 a.a.
NCBI ID   WP_126403892.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 518652..529311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS02845 (NCTC3166_00572) - 519824..520402 (+) 579 WP_126403889.1 YutD-like domain-containing protein -
  EL081_RS02850 (NCTC3166_00573) rlmN 520421..521509 (+) 1089 WP_126403890.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  EL081_RS02855 (NCTC3166_00574) - 521487..522020 (+) 534 WP_185946464.1 VanZ family protein -
  EL081_RS02860 (NCTC3166_00576) trpB 522458..523645 (+) 1188 WP_126403891.1 tryptophan synthase subunit beta -
  EL081_RS02865 (NCTC3166_00577) cclA/cilC 523652..524311 (-) 660 WP_126403892.1 A24 family peptidase Machinery gene
  EL081_RS02870 (NCTC3166_00578) - 524465..524992 (+) 528 WP_006596795.1 Dps family protein -
  EL081_RS02875 (NCTC3166_00579) - 525117..525335 (+) 219 WP_126403893.1 YqgQ family protein -
  EL081_RS02880 (NCTC3166_00580) - 525374..525718 (+) 345 WP_048687808.1 rhodanese-like domain-containing protein -
  EL081_RS02885 (NCTC3166_00581) - 525793..526026 (+) 234 WP_006597131.1 hypothetical protein -
  EL081_RS02890 (NCTC3166_00582) - 526064..526789 (-) 726 WP_126403894.1 16S rRNA pseudouridine(516) synthase -
  EL081_RS02895 (NCTC3166_00583) typA 527027..528874 (+) 1848 WP_126403895.1 translational GTPase TypA -
  EL081_RS02900 (NCTC3166_00584) - 528897..529163 (+) 267 WP_126403896.1 DUF3165 family protein -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24771.87 Da        Isoelectric Point: 7.5346

>NTDB_id=1119566 EL081_RS02865 WP_126403892.1 523652..524311(-) (cclA/cilC) [Streptococcus viridans strain NCTC3166]
MINFYFFTVGACMASFLGLVIDRFPESSIIHPRSHCDQCQQTLGVLDLIPILSQVLFRFRCRYCQSPLPYWYTLFEAWSG
LLFLLCYQGLLPIPHLLVLLGSCVLAIYDLRSMEYPLLLWLVLHALCLFFTSPTLLMGVFLFLGVLSAVYSIGIGAGDFL
LLATFSLTLSAVQVLLVMQGASLIGLLTFLFKKEKDRIPFVPCLFLSYHALLFFTILSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1119566 EL081_RS02865 WP_126403892.1 523652..524311(-) (cclA/cilC) [Streptococcus viridans strain NCTC3166]
ATGATCAACTTCTATTTTTTTACAGTCGGCGCCTGTATGGCCTCCTTTTTAGGTCTCGTCATCGACCGTTTTCCAGAAAG
CTCCATCATTCATCCAAGAAGCCATTGCGACCAATGTCAACAGACCTTGGGAGTTCTAGACTTGATTCCTATTCTTTCGC
AAGTTCTTTTTCGATTCCGTTGTCGCTACTGCCAGAGTCCTCTGCCTTATTGGTATACCCTTTTTGAAGCCTGGAGTGGT
CTCCTCTTTTTGCTGTGCTATCAGGGTCTTCTTCCCATTCCTCATCTCCTGGTTCTTCTTGGCAGTTGCGTTTTAGCCAT
CTATGATTTGCGATCCATGGAGTACCCGCTCCTCCTCTGGCTAGTGCTCCACGCTCTTTGCCTGTTTTTCACCAGTCCTA
CCCTCTTGATGGGAGTCTTTCTCTTCTTAGGAGTCCTGTCAGCTGTTTACTCCATCGGCATTGGAGCAGGGGATTTTCTC
TTACTGGCTACTTTTTCTTTGACCCTCTCGGCCGTCCAAGTCCTCCTAGTCATGCAAGGGGCTTCCCTCATCGGTCTCCT
TACCTTTCTCTTTAAAAAAGAAAAAGACCGGATTCCTTTTGTTCCCTGTCTTTTTCTGAGTTATCATGCTTTACTGTTTT
TTACAATTTTAAGCAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50.691

99.087

0.502

  cclA/cilC Streptococcus pneumoniae Rx1

50.691

99.087

0.502

  cclA/cilC Streptococcus pneumoniae D39

50.691

99.087

0.502

  cclA/cilC Streptococcus pneumoniae R6

50.691

99.087

0.502

  cclA/cilC Streptococcus mitis NCTC 12261

50.23

99.087

0.498

  cclA/cilC Streptococcus pneumoniae TIGR4

50.23

99.087

0.498


Multiple sequence alignment