Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EL071_RS01435 | Genome accession | NZ_LR134265 |
| Coordinates | 262250..262741 (-) | Length | 163 a.a. |
| NCBI ID | WP_129544839.1 | Uniprot ID | A0AB38VID6 |
| Organism | Streptococcus agalactiae strain NCTC8184 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 257250..267741
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL071_RS01420 (NCTC8184_00267) | - | 260156..260827 (-) | 672 | WP_115356622.1 | DUF1129 family protein | - |
| EL071_RS01425 (NCTC8184_00268) | - | 260852..261796 (-) | 945 | WP_000812121.1 | magnesium transporter CorA family protein | - |
| EL071_RS01430 (NCTC8184_00269) | rpsR | 261966..262205 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| EL071_RS01435 (NCTC8184_00270) | ssb | 262250..262741 (-) | 492 | WP_129544839.1 | single-stranded DNA-binding protein | Machinery gene |
| EL071_RS01440 (NCTC8184_00271) | rpsF | 262753..263040 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| EL071_RS01445 (NCTC8184_00272) | mutY | 264105..265259 (+) | 1155 | WP_164993762.1 | A/G-specific adenine glycosylase | - |
| EL071_RS01450 (NCTC8184_00273) | - | 265436..266029 (+) | 594 | WP_115356620.1 | helix-turn-helix transcriptional regulator | - |
| EL071_RS01455 (NCTC8184_00274) | trxA | 266075..266407 (-) | 333 | WP_258862095.1 | thioredoxin | - |
| EL071_RS01460 (NCTC8184_00275) | - | 266470..266970 (-) | 501 | WP_115356618.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18138.78 Da Isoelectric Point: 4.9119
>NTDB_id=1119492 EL071_RS01435 WP_129544839.1 262250..262741(-) (ssb) [Streptococcus agalactiae strain NCTC8184]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1119492 EL071_RS01435 WP_129544839.1 262250..262741(-) (ssb) [Streptococcus agalactiae strain NCTC8184]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAGTCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAGTCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.48 |
100 |
0.614 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.143 |
100 |
0.613 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
65.031 |
0.362 |