Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL075_RS11560 | Genome accession | NZ_LR134244 |
| Coordinates | 2380819..2381334 (-) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus warneri strain NCTC7291 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2368910..2383102 | 2380819..2381334 | within | 0 |
Gene organization within MGE regions
Location: 2368910..2383102
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL075_RS11470 (NCTC7291_02365) | - | 2368925..2369395 (-) | 471 | Protein_2219 | terminase small subunit | - |
| EL075_RS11480 (NCTC7291_02366) | - | 2369744..2370340 (-) | 597 | WP_126403389.1 | pathogenicity island protein | - |
| EL075_RS11485 (NCTC7291_02367) | - | 2370354..2371115 (-) | 762 | WP_126403390.1 | hypothetical protein | - |
| EL075_RS11490 | - | 2371129..2371407 (-) | 279 | WP_415239125.1 | pathogenicity island protein | - |
| EL075_RS11495 (NCTC7291_02368) | - | 2371760..2372401 (-) | 642 | WP_126403391.1 | pathogenicity island protein | - |
| EL075_RS11500 (NCTC7291_02369) | - | 2372403..2372666 (-) | 264 | WP_126403392.1 | hypothetical protein | - |
| EL075_RS11505 (NCTC7291_02370) | - | 2372668..2373024 (-) | 357 | WP_126403393.1 | pathogenicity island protein | - |
| EL075_RS11510 (NCTC7291_02371) | - | 2373274..2374629 (-) | 1356 | WP_126403394.1 | phage/plasmid primase, P4 family | - |
| EL075_RS11515 (NCTC7291_02372) | - | 2374641..2375510 (-) | 870 | WP_126403395.1 | primase alpha helix C-terminal domain-containing protein | - |
| EL075_RS11520 (NCTC7291_02373) | tscT | 2375602..2375910 (-) | 309 | WP_126403396.1 | type II toxin-antitoxin system toxin TscT | - |
| EL075_RS11525 (NCTC7291_02374) | - | 2375910..2376323 (-) | 414 | WP_126403397.1 | pathogenicity island protein | - |
| EL075_RS12010 (NCTC7291_02375) | - | 2376325..2376462 (-) | 138 | WP_000800860.1 | hypothetical protein | - |
| EL075_RS11530 (NCTC7291_02376) | - | 2376478..2376750 (-) | 273 | WP_126403398.1 | helix-turn-helix domain-containing protein | - |
| EL075_RS11535 (NCTC7291_02377) | - | 2376751..2376972 (-) | 222 | WP_126403399.1 | helix-turn-helix transcriptional regulator | - |
| EL075_RS11540 (NCTC7291_02378) | - | 2377145..2377717 (+) | 573 | WP_126403400.1 | helix-turn-helix domain-containing protein | - |
| EL075_RS11545 (NCTC7291_02379) | - | 2377744..2379060 (+) | 1317 | WP_126403401.1 | DUF4041 domain-containing protein | - |
| EL075_RS11550 (NCTC7291_02380) | - | 2379082..2380305 (+) | 1224 | WP_126403402.1 | tyrosine-type recombinase/integrase | - |
| EL075_RS11555 (NCTC7291_02381) | rpsR | 2380532..2380774 (-) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| EL075_RS11560 (NCTC7291_02382) | ssbA | 2380819..2381334 (-) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| EL075_RS11565 (NCTC7291_02383) | rpsF | 2381356..2381652 (-) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| EL075_RS11570 (NCTC7291_02384) | - | 2382028..2382849 (+) | 822 | WP_002466546.1 | GH25 family lysozyme | - |
| EL075_RS11575 (NCTC7291_02385) | - | 2382911..2383102 (+) | 192 | WP_002451523.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=1119383 EL075_RS11560 WP_002466536.1 2380819..2381334(-) (ssbA) [Staphylococcus warneri strain NCTC7291]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=1119383 EL075_RS11560 WP_002466536.1 2380819..2381334(-) (ssbA) [Staphylococcus warneri strain NCTC7291]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |