Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL068_RS11365 | Genome accession | NZ_LR134242 |
| Coordinates | 2361443..2361958 (-) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus warneri strain NCTC4133 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2346831..2363726 | 2361443..2361958 | within | 0 |
Gene organization within MGE regions
Location: 2346831..2363726
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL068_RS11765 (NCTC4133_02303) | - | 2346831..2347007 (+) | 177 | WP_162837427.1 | hypothetical protein | - |
| EL068_RS11270 (NCTC4133_02304) | - | 2347083..2347337 (-) | 255 | WP_049416691.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| EL068_RS11280 (NCTC4133_02306) | - | 2347896..2348165 (-) | 270 | WP_002467118.1 | hypothetical protein | - |
| EL068_RS11285 (NCTC4133_02307) | - | 2350641..2351162 (-) | 522 | WP_126510601.1 | terminase small subunit | - |
| EL068_RS11290 (NCTC4133_02308) | - | 2351167..2351508 (-) | 342 | WP_126510602.1 | MarR family transcriptional regulator | - |
| EL068_RS11295 (NCTC4133_02309) | - | 2351511..2351969 (-) | 459 | WP_126510603.1 | pathogenicity island protein | - |
| EL068_RS11300 (NCTC4133_02310) | - | 2352031..2352684 (-) | 654 | WP_126510604.1 | hypothetical protein | - |
| EL068_RS11305 (NCTC4133_02311) | - | 2352714..2353055 (-) | 342 | WP_126510605.1 | pathogenicity island protein | - |
| EL068_RS11310 (NCTC4133_02312) | - | 2353620..2354261 (-) | 642 | WP_126510606.1 | pathogenicity island protein | - |
| EL068_RS11315 (NCTC4133_02313) | - | 2354258..2354608 (-) | 351 | WP_126510607.1 | hypothetical protein | - |
| EL068_RS11320 (NCTC4133_02314) | - | 2354879..2357131 (-) | 2253 | WP_126510608.1 | phage/plasmid primase, P4 family | - |
| EL068_RS11325 (NCTC4133_02315) | tscT | 2357228..2357533 (-) | 306 | WP_126510609.1 | type II toxin-antitoxin system toxin TscT | - |
| EL068_RS11330 (NCTC4133_02316) | - | 2357533..2357895 (-) | 363 | WP_126510610.1 | pathogenicity island protein | - |
| EL068_RS11335 (NCTC4133_02317) | tscA | 2357897..2358109 (-) | 213 | WP_126510611.1 | type II toxin-antitoxin system antitoxin TscA | - |
| EL068_RS11770 (NCTC4133_02318) | - | 2358111..2358266 (-) | 156 | WP_186330023.1 | hypothetical protein | - |
| EL068_RS11340 (NCTC4133_02319) | - | 2358279..2358551 (-) | 273 | WP_002451515.1 | hypothetical protein | - |
| EL068_RS11345 (NCTC4133_02320) | - | 2358552..2358716 (-) | 165 | WP_002451516.1 | helix-turn-helix domain-containing protein | - |
| EL068_RS11350 (NCTC4133_02321) | - | 2358921..2359682 (+) | 762 | WP_002451517.1 | helix-turn-helix domain-containing protein | - |
| EL068_RS11355 (NCTC4133_02322) | - | 2359706..2360929 (+) | 1224 | WP_126510612.1 | tyrosine-type recombinase/integrase | - |
| EL068_RS11360 (NCTC4133_02323) | rpsR | 2361156..2361398 (-) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| EL068_RS11365 (NCTC4133_02324) | ssbA | 2361443..2361958 (-) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| EL068_RS11370 (NCTC4133_02325) | rpsF | 2361980..2362276 (-) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| EL068_RS11375 (NCTC4133_02326) | - | 2362652..2363473 (+) | 822 | WP_002466546.1 | GH25 family lysozyme | - |
| EL068_RS11380 (NCTC4133_02327) | - | 2363535..2363726 (+) | 192 | WP_002451523.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=1119348 EL068_RS11365 WP_002466536.1 2361443..2361958(-) (ssbA) [Staphylococcus warneri strain NCTC4133]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=1119348 EL068_RS11365 WP_002466536.1 2361443..2361958(-) (ssbA) [Staphylococcus warneri strain NCTC4133]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |