Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RCA23_RS07715 Genome accession   NZ_CP003984
Coordinates   1624944..1625456 (-) Length   170 a.a.
NCBI ID   WP_044049822.1    Uniprot ID   -
Organism   Planktomarina temperata RCA23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1619944..1630456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCA23_RS07690 (RCA23_c15060) - 1620585..1621505 (-) 921 WP_044049817.1 tyrosine recombinase -
  RCA23_RS07695 (RCA23_c15070) - 1621502..1622956 (-) 1455 WP_044049818.1 hypothetical protein -
  RCA23_RS07700 (RCA23_c15080) - 1622958..1623158 (-) 201 WP_169701285.1 hypothetical protein -
  RCA23_RS07705 (RCA23_c15090) - 1623212..1623763 (+) 552 WP_044049820.1 shikimate kinase -
  RCA23_RS07710 (RCA23_c15100) aroB 1623760..1624878 (+) 1119 WP_044049821.1 3-dehydroquinate synthase -
  RCA23_RS07715 (RCA23_c15110) ssb 1624944..1625456 (-) 513 WP_044049822.1 single-stranded DNA-binding protein Machinery gene
  RCA23_RS07720 (RCA23_c15120) - 1625688..1627772 (-) 2085 WP_044049823.1 ABC transporter ATP-binding protein -
  RCA23_RS07725 (RCA23_c15130) - 1627777..1629210 (-) 1434 WP_081871017.1 ABC transporter permease -
  RCA23_RS07730 (RCA23_c15140) - 1629392..1630438 (-) 1047 WP_044049825.1 ABC transporter permease -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18421.12 Da        Isoelectric Point: 4.8501

>NTDB_id=111921 RCA23_RS07715 WP_044049822.1 1624944..1625456(-) (ssb) [Planktomarina temperata RCA23]
MAGSVNKVIIIGNLGQDPEVRSFPSGGKVCNFSVATSENWKDRNTGERREKTEWHRVSITSEPLVRVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYTTEVVLRPYRSELTMLDSRGEGGGGGQGGGYVSNQDGGGQGGYMADPNQGGNQAGGYSSPAP
SADLDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=111921 RCA23_RS07715 WP_044049822.1 1624944..1625456(-) (ssb) [Planktomarina temperata RCA23]
ATGGCCGGATCAGTAAATAAAGTGATTATCATCGGAAACTTGGGACAAGATCCTGAAGTGCGCAGCTTTCCAAGCGGCGG
AAAAGTTTGTAACTTTTCGGTAGCGACCTCCGAAAATTGGAAAGATCGCAACACTGGTGAGCGCCGTGAAAAAACCGAAT
GGCATCGTGTCTCCATCACCTCAGAACCTTTGGTGCGCGTGGCAGAACAATATTTGCGCAAGGGATCAAAAGTTTACCTT
GAGGGACAGTTGGAAACCCGCAAATGGCAAGATCAATCCGGTCAGGACCGCTACACAACTGAAGTGGTGCTGCGCCCCTA
CCGTTCAGAATTGACCATGCTCGACAGCCGCGGTGAAGGCGGCGGTGGCGGCCAAGGTGGTGGGTATGTCTCCAATCAAG
ACGGCGGTGGCCAGGGCGGTTACATGGCCGATCCGAACCAGGGCGGCAATCAAGCGGGCGGCTATAGCAGCCCCGCGCCC
TCAGCCGATCTCGACGACGAAATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.688

100

0.576
  ssb Vibrio cholerae strain A1552

56.647

100

0.576
  ssb Neisseria meningitidis MC58

41.989

100

0.447
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.447

Multiple sequence alignment