Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EL098_RS17260 | Genome accession | NZ_LR134201 |
| Coordinates | 3525259..3525711 (+) | Length | 150 a.a. |
| NCBI ID | WP_126357327.1 | Uniprot ID | - |
| Organism | Cedecea lapagei strain NCTC11466 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3486040..3531838 | 3525259..3525711 | within | 0 |
Gene organization within MGE regions
Location: 3486040..3531838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL098_RS16915 | - | 3486207..3486626 (-) | 420 | WP_164716887.1 | hypothetical protein | - |
| EL098_RS16920 | - | 3486628..3487365 (-) | 738 | WP_126357277.1 | hypothetical protein | - |
| EL098_RS23570 (NCTC11466_03470) | - | 3487430..3488227 (-) | 798 | WP_232012233.1 | hypothetical protein | - |
| EL098_RS16930 (NCTC11466_03471) | - | 3488404..3489051 (-) | 648 | WP_126357278.1 | DUF2612 domain-containing protein | - |
| EL098_RS16935 (NCTC11466_03472) | - | 3489048..3490283 (-) | 1236 | WP_126357279.1 | baseplate J/gp47 family protein | - |
| EL098_RS16940 (NCTC11466_03473) | - | 3490292..3490651 (-) | 360 | WP_126357280.1 | hypothetical protein | - |
| EL098_RS16945 (NCTC11466_03474) | - | 3490923..3491639 (-) | 717 | WP_126357281.1 | Gp138 family membrane-puncturing spike protein | - |
| EL098_RS16950 (NCTC11466_03475) | - | 3491614..3492492 (-) | 879 | WP_126357282.1 | hypothetical protein | - |
| EL098_RS16955 (NCTC11466_03476) | - | 3492489..3492794 (-) | 306 | WP_126357283.1 | phage baseplate plug protein | - |
| EL098_RS16960 (NCTC11466_03477) | - | 3492794..3493600 (-) | 807 | WP_126357284.1 | phage baseplate protein | - |
| EL098_RS16965 (NCTC11466_03478) | - | 3493604..3495550 (-) | 1947 | WP_126357285.1 | lytic transglycosylase domain-containing protein | - |
| EL098_RS16970 (NCTC11466_03479) | - | 3495595..3496041 (-) | 447 | WP_126357286.1 | hypothetical protein | - |
| EL098_RS16975 (NCTC11466_03480) | - | 3496041..3496238 (-) | 198 | WP_126357287.1 | transglycosylase | - |
| EL098_RS16980 (NCTC11466_03481) | - | 3496253..3496657 (-) | 405 | WP_126357288.1 | hypothetical protein | - |
| EL098_RS16985 (NCTC11466_03482) | - | 3496667..3497110 (-) | 444 | WP_232012234.1 | phage tail fiber protein | - |
| EL098_RS16990 (NCTC11466_03483) | - | 3497111..3498589 (-) | 1479 | WP_126357289.1 | DUF3383 domain-containing protein | - |
| EL098_RS16995 (NCTC11466_03484) | - | 3498590..3499141 (-) | 552 | WP_232012235.1 | LIC_12616 family protein | - |
| EL098_RS17000 (NCTC11466_03485) | - | 3499138..3499506 (-) | 369 | WP_126357290.1 | hypothetical protein | - |
| EL098_RS17005 (NCTC11466_03486) | - | 3499506..3499949 (-) | 444 | WP_126357291.1 | hypothetical protein | - |
| EL098_RS17010 (NCTC11466_03487) | - | 3499942..3500346 (-) | 405 | WP_126357292.1 | DUF4054 domain-containing protein | - |
| EL098_RS23575 (NCTC11466_03488) | - | 3500350..3500676 (-) | 327 | WP_126357293.1 | hypothetical protein | - |
| EL098_RS17020 (NCTC11466_03489) | - | 3500676..3501695 (-) | 1020 | WP_126357294.1 | hypothetical protein | - |
| EL098_RS17025 (NCTC11466_03490) | - | 3501695..3502021 (-) | 327 | WP_232012236.1 | hypothetical protein | - |
| EL098_RS17030 (NCTC11466_03491) | - | 3502194..3503375 (-) | 1182 | WP_126357296.1 | DUF2213 domain-containing protein | - |
| EL098_RS17035 (NCTC11466_03492) | - | 3503437..3504246 (-) | 810 | WP_232012237.1 | phage minor head protein | - |
| EL098_RS17040 (NCTC11466_03493) | - | 3504203..3505633 (-) | 1431 | WP_126357297.1 | DUF1073 domain-containing protein | - |
| EL098_RS17045 (NCTC11466_03494) | - | 3505630..3506999 (-) | 1370 | Protein_3333 | PBSX family phage terminase large subunit | - |
| EL098_RS17050 (NCTC11466_03495) | - | 3506986..3507567 (-) | 582 | WP_126357299.1 | terminase small subunit | - |
| EL098_RS17055 (NCTC11466_03496) | - | 3507620..3507817 (-) | 198 | WP_126357300.1 | hypothetical protein | - |
| EL098_RS23240 (NCTC11466_03497) | - | 3507818..3507985 (-) | 168 | WP_164716889.1 | hypothetical protein | - |
| EL098_RS17060 (NCTC11466_03498) | - | 3507988..3508206 (-) | 219 | WP_126357301.1 | hypothetical protein | - |
| EL098_RS17065 (NCTC11466_03499) | - | 3508208..3508693 (-) | 486 | WP_126357302.1 | hypothetical protein | - |
| EL098_RS17075 (NCTC11466_03500) | - | 3508832..3509245 (-) | 414 | WP_126357303.1 | DUF2570 domain-containing protein | - |
| EL098_RS17080 (NCTC11466_03501) | - | 3509242..3509868 (-) | 627 | WP_126357304.1 | glycoside hydrolase family 19 protein | - |
| EL098_RS23755 | - | 3509861..3510346 (-) | 486 | WP_331852860.1 | phage holin family protein | - |
| EL098_RS17095 (NCTC11466_03504) | - | 3511490..3512251 (-) | 762 | WP_126357305.1 | antitermination protein | - |
| EL098_RS17100 (NCTC11466_03505) | - | 3512248..3512454 (-) | 207 | WP_126357306.1 | protein ninH | - |
| EL098_RS17105 (NCTC11466_03506) | - | 3512451..3512630 (-) | 180 | WP_126356128.1 | hypothetical protein | - |
| EL098_RS17110 | - | 3512627..3512806 (-) | 180 | WP_126357307.1 | hypothetical protein | - |
| EL098_RS17115 (NCTC11466_03507) | rusA | 3512803..3513201 (-) | 399 | WP_126357308.1 | crossover junction endodeoxyribonuclease RusA | - |
| EL098_RS17120 (NCTC11466_03508) | - | 3513198..3513488 (-) | 291 | WP_085542934.1 | DUF1364 domain-containing protein | - |
| EL098_RS17125 (NCTC11466_03509) | - | 3513481..3513780 (-) | 300 | WP_126356131.1 | hypothetical protein | - |
| EL098_RS23825 (NCTC11466_03510) | - | 3513773..3513943 (-) | 171 | WP_126356132.1 | protein NinF | - |
| EL098_RS17135 (NCTC11466_03511) | - | 3513937..3514716 (-) | 780 | WP_126356133.1 | DNA cytosine methyltransferase | - |
| EL098_RS17145 (NCTC11466_03513) | - | 3514921..3515370 (-) | 450 | WP_126357309.1 | DUF1367 family protein | - |
| EL098_RS17150 (NCTC11466_03514) | - | 3515374..3515562 (-) | 189 | WP_126357310.1 | hypothetical protein | - |
| EL098_RS17155 (NCTC11466_03515) | - | 3515555..3515863 (-) | 309 | WP_126357311.1 | hypothetical protein | - |
| EL098_RS17160 (NCTC11466_03516) | - | 3515893..3516114 (-) | 222 | WP_126357312.1 | hypothetical protein | - |
| EL098_RS23245 (NCTC11466_03517) | - | 3516104..3516271 (-) | 168 | WP_164716891.1 | hypothetical protein | - |
| EL098_RS23250 (NCTC11466_03518) | - | 3516298..3516459 (-) | 162 | WP_164716893.1 | hypothetical protein | - |
| EL098_RS17165 (NCTC11466_03519) | - | 3516557..3516775 (-) | 219 | WP_126357313.1 | hypothetical protein | - |
| EL098_RS17170 (NCTC11466_03520) | - | 3516772..3516993 (-) | 222 | WP_126357314.1 | hypothetical protein | - |
| EL098_RS17175 (NCTC11466_03521) | - | 3516990..3517265 (-) | 276 | WP_408609085.1 | hypothetical protein | - |
| EL098_RS17180 (NCTC11466_03522) | - | 3517246..3517617 (-) | 372 | WP_126357315.1 | MarR family transcriptional regulator | - |
| EL098_RS17185 (NCTC11466_03523) | - | 3517630..3518394 (-) | 765 | WP_126357316.1 | replication protein P | - |
| EL098_RS23585 (NCTC11466_03524) | - | 3518391..3519146 (-) | 756 | WP_232012238.1 | hypothetical protein | - |
| EL098_RS17195 (NCTC11466_03525) | - | 3519146..3519817 (-) | 672 | WP_232012239.1 | phage antirepressor KilAC domain-containing protein | - |
| EL098_RS17200 (NCTC11466_03526) | - | 3519829..3520125 (-) | 297 | WP_126357317.1 | CII family transcriptional regulator | - |
| EL098_RS17205 (NCTC11466_03527) | - | 3520242..3520457 (-) | 216 | WP_126357318.1 | helix-turn-helix domain-containing protein | - |
| EL098_RS17210 (NCTC11466_03528) | - | 3520559..3521191 (+) | 633 | WP_126357319.1 | LexA family transcriptional regulator | - |
| EL098_RS23590 (NCTC11466_03529) | - | 3521603..3521872 (+) | 270 | WP_126357320.1 | hypothetical protein | - |
| EL098_RS17220 (NCTC11466_03530) | - | 3521891..3522118 (+) | 228 | WP_126357321.1 | hypothetical protein | - |
| EL098_RS17225 (NCTC11466_03531) | - | 3522223..3522504 (+) | 282 | WP_126357322.1 | hypothetical protein | - |
| EL098_RS17230 (NCTC11466_03532) | - | 3522554..3522748 (+) | 195 | WP_126357323.1 | hypothetical protein | - |
| EL098_RS23830 (NCTC11466_03533) | - | 3522783..3523040 (+) | 258 | WP_126357324.1 | DUF551 domain-containing protein | - |
| EL098_RS17240 (NCTC11466_03534) | - | 3523138..3524112 (+) | 975 | WP_126357325.1 | hypothetical protein | - |
| EL098_RS17245 (NCTC11466_03535) | - | 3524196..3524333 (+) | 138 | WP_126356156.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| EL098_RS17250 (NCTC11466_03536) | - | 3524336..3524524 (+) | 189 | WP_126356157.1 | DUF5444 family protein | - |
| EL098_RS23255 (NCTC11466_03537) | - | 3524514..3524657 (+) | 144 | WP_164716895.1 | hypothetical protein | - |
| EL098_RS17255 (NCTC11466_03538) | - | 3524654..3525259 (+) | 606 | WP_126357326.1 | ERF family protein | - |
| EL098_RS17260 (NCTC11466_03539) | ssb | 3525259..3525711 (+) | 453 | WP_126357327.1 | single-stranded DNA-binding protein | Machinery gene |
| EL098_RS17265 (NCTC11466_03540) | - | 3525720..3526268 (+) | 549 | WP_126357328.1 | 3'-5' exonuclease | - |
| EL098_RS17270 (NCTC11466_03541) | - | 3526288..3526593 (+) | 306 | WP_126357329.1 | phage anti-RecBCD protein | - |
| EL098_RS17275 (NCTC11466_03542) | - | 3526604..3526864 (+) | 261 | WP_126357330.1 | hypothetical protein | - |
| EL098_RS17280 | - | 3526882..3527058 (+) | 177 | WP_126357331.1 | DUF2737 family protein | - |
| EL098_RS23595 (NCTC11466_03545) | - | 3527376..3528050 (+) | 675 | WP_232012240.1 | DUF4752 domain-containing protein | - |
| EL098_RS17290 (NCTC11466_03546) | - | 3528047..3528532 (+) | 486 | WP_126356164.1 | hypothetical protein | - |
| EL098_RS17295 (NCTC11466_03547) | - | 3528529..3529149 (+) | 621 | WP_126357332.1 | hypothetical protein | - |
| EL098_RS17300 (NCTC11466_03548) | - | 3529149..3529406 (+) | 258 | WP_126357333.1 | eaa protein | - |
| EL098_RS17305 (NCTC11466_03549) | - | 3529399..3529830 (+) | 432 | WP_126357334.1 | hypothetical protein | - |
| EL098_RS17310 (NCTC11466_03550) | - | 3529900..3530445 (+) | 546 | WP_126357335.1 | hypothetical protein | - |
| EL098_RS17315 (NCTC11466_03552) | - | 3530792..3531838 (+) | 1047 | WP_126357336.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16606.62 Da Isoelectric Point: 7.2030
>NTDB_id=1118925 EL098_RS17260 WP_126357327.1 3525259..3525711(+) (ssb) [Cedecea lapagei strain NCTC11466]
MANRGVNKVIIVGNLGQDPEVRYLPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGKLTARKWTDQAGVEKYTTEIHVNVGGTMQMLGGKQEGSQQSKPQKKQQQSSQAPSNEPPMDFDDDIPF
MANRGVNKVIIVGNLGQDPEVRYLPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGKLTARKWTDQAGVEKYTTEIHVNVGGTMQMLGGKQEGSQQSKPQKKQQQSSQAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=1118925 EL098_RS17260 WP_126357327.1 3525259..3525711(+) (ssb) [Cedecea lapagei strain NCTC11466]
ATGGCTAATCGCGGAGTAAACAAAGTAATCATCGTCGGAAACCTAGGGCAAGACCCCGAGGTTCGTTACCTTCCGAATGG
TGGCGCAGTAGCAAATATCACCCTGGCAACATCCGAGTCATGGCGAGATAAGCAGACTGGCGAGACGAAAGAGAAAACAG
AGTGGCACCGTGTGGTGCTGTTCGGGAAGTTGGCAGAGGTGGCCGGGGAATACCTGCGGAAAGGCTCTCAGGTTTATATC
GAAGGTAAGCTAACGGCTCGAAAATGGACTGACCAGGCAGGAGTGGAAAAGTACACCACAGAGATTCACGTCAATGTCGG
TGGAACCATGCAAATGCTTGGCGGGAAGCAGGAAGGAAGTCAGCAAAGTAAACCTCAGAAAAAACAGCAGCAATCATCAC
AAGCCCCGTCAAATGAACCGCCGATGGATTTCGACGACGACATTCCATTCTAA
ATGGCTAATCGCGGAGTAAACAAAGTAATCATCGTCGGAAACCTAGGGCAAGACCCCGAGGTTCGTTACCTTCCGAATGG
TGGCGCAGTAGCAAATATCACCCTGGCAACATCCGAGTCATGGCGAGATAAGCAGACTGGCGAGACGAAAGAGAAAACAG
AGTGGCACCGTGTGGTGCTGTTCGGGAAGTTGGCAGAGGTGGCCGGGGAATACCTGCGGAAAGGCTCTCAGGTTTATATC
GAAGGTAAGCTAACGGCTCGAAAATGGACTGACCAGGCAGGAGTGGAAAAGTACACCACAGAGATTCACGTCAATGTCGG
TGGAACCATGCAAATGCTTGGCGGGAAGCAGGAAGGAAGTCAGCAAAGTAAACCTCAGAAAAAACAGCAGCAATCATCAC
AAGCCCCGTCAAATGAACCGCCGATGGATTTCGACGACGACATTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.147 |
100 |
0.733 |
| ssb | Glaesserella parasuis strain SC1401 |
50.543 |
100 |
0.62 |
| ssb | Neisseria meningitidis MC58 |
41.477 |
100 |
0.487 |
| ssb | Neisseria gonorrhoeae MS11 |
41.477 |
100 |
0.487 |