Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | ELZ63_RS01365 | Genome accession | NZ_LR134171 |
| Coordinates | 271809..272222 (+) | Length | 137 a.a. |
| NCBI ID | WP_065245039.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC12699 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 266809..277222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELZ63_RS01345 (NCTC12699_00265) | - | 267297..269891 (-) | 2595 | WP_065245042.1 | penicillin-binding protein 1A | - |
| ELZ63_RS01350 (NCTC12699_00266) | comA | 269990..270787 (+) | 798 | WP_065245041.1 | competence protein ComA | Machinery gene |
| ELZ63_RS01355 (NCTC12699_00267) | comB | 270788..271294 (+) | 507 | WP_005652121.1 | competence protein ComB | Machinery gene |
| ELZ63_RS01360 (NCTC12699_00268) | comC | 271291..271812 (+) | 522 | WP_065245040.1 | competence protein ComC | Machinery gene |
| ELZ63_RS01365 (NCTC12699_00269) | comD | 271809..272222 (+) | 414 | WP_065245039.1 | pilus assembly protein PilP | Machinery gene |
| ELZ63_RS01370 (NCTC12699_00270) | comE | 272232..273569 (+) | 1338 | WP_065245038.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| ELZ63_RS01375 (NCTC12699_00271) | - | 273582..274268 (+) | 687 | WP_065245037.1 | ComF family protein | - |
| ELZ63_RS01380 (NCTC12699_00272) | nfuA | 274344..274940 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| ELZ63_RS01385 (NCTC12699_00273) | nudC | 275007..275801 (+) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| ELZ63_RS01390 (NCTC12699_00274) | - | 275837..276427 (+) | 591 | WP_048954881.1 | YjaG family protein | - |
| ELZ63_RS01395 (NCTC12699_00275) | - | 276567..276839 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15721.89 Da Isoelectric Point: 4.4355
>NTDB_id=1118728 ELZ63_RS01365 WP_065245039.1 271809..272222(+) (comD) [Haemophilus influenzae strain NCTC12699]
MKYWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1118728 ELZ63_RS01365 WP_065245039.1 271809..272222(+) (comD) [Haemophilus influenzae strain NCTC12699]
ATGAAGTATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |