Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELZ61_RS03110 Genome accession   NZ_LR134167
Coordinates   639305..639841 (-) Length   178 a.a.
NCBI ID   WP_126371363.1    Uniprot ID   A0A447SPT6
Organism   Avibacterium volantium strain NCTC3438     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 634305..644841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS03095 (NCTC3438_00629) - 635322..635831 (-) 510 WP_126371357.1 MltR family transcriptional regulator -
  ELZ61_RS03100 (NCTC3438_00630) - 635877..637031 (-) 1155 WP_126371359.1 mannitol-1-phosphate 5-dehydrogenase -
  ELZ61_RS03105 (NCTC3438_00631) - 637099..638970 (-) 1872 WP_126371361.1 PTS mannitol transporter subunit IICBA -
  ELZ61_RS03110 (NCTC3438_00632) ssb 639305..639841 (-) 537 WP_126371363.1 single-stranded DNA-binding protein Machinery gene
  ELZ61_RS03115 (NCTC3438_00633) uvrA 640012..642840 (+) 2829 WP_126371365.1 excinuclease ABC subunit UvrA -
  ELZ61_RS03120 (NCTC3438_00634) - 642988..644034 (+) 1047 WP_126371367.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19726.80 Da        Isoelectric Point: 5.0100

>NTDB_id=1118642 ELZ61_RS03110 WP_126371363.1 639305..639841(-) (ssb) [Avibacterium volantium strain NCTC3438]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWMDKNTGERREITEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRAERTQGGYAPQGGGYAQQGGGYAAQQGGNQYAQPTQPAYQAQRAAPQAT
PAPQPVIDDVPLDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1118642 ELZ61_RS03110 WP_126371363.1 639305..639841(-) (ssb) [Avibacterium volantium strain NCTC3438]
ATGGCTGGAGTAAACAAAGTTATTATCGTAGGAAACCTAGGAAACGATCCTGAAATTCGCACAATGCCAAATGGCGAAGC
TGTGGCGAACATTAGCGTAGCAACCAGTGAAAGCTGGATGGATAAAAACACCGGTGAACGCCGTGAAATCACCGAATGGC
ATCGCATTGTGTTCTATCGCCGTCAAGCTGAAATTGTGGGTGAATATTTGCGCAAAGGTTCAAAAGTTTATGTTGAAGGG
CGTTTAAGAACGCGCAAATGGCAAGATCAAAATGGCCAAGATCGCTACACCACGGAAATCCAAGGCGATGTGCTACAAAT
GTTAGACAGCCGCGCAGAACGTACTCAAGGCGGCTATGCACCGCAAGGCGGGGGATATGCCCAACAAGGTGGTGGCTATG
CAGCTCAACAAGGGGGCAATCAATATGCTCAACCTACACAGCCCGCATATCAAGCACAAAGAGCCGCACCACAAGCAACA
CCTGCGCCACAGCCAGTGATTGATGACGTGCCATTAGATGATGATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A447SPT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.667

100

0.685
  ssb Vibrio cholerae strain A1552

56.831

100

0.584
  ssb Neisseria meningitidis MC58

48.876

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.483

Multiple sequence alignment