Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL026_RS20420 Genome accession   NZ_LR134161
Coordinates   4335721..4336269 (-) Length   182 a.a.
NCBI ID   WP_005165221.1    Uniprot ID   A0A0E1NLP2
Organism   Yersinia enterocolitica subsp. enterocolitica strain NCTC13629     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4330721..4341269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL026_RS20400 (NCTC13629_04051) - 4331309..4332676 (-) 1368 WP_005165212.1 NCS2 family permease -
  EL026_RS20405 (NCTC13629_04052) - 4333037..4333708 (-) 672 WP_005165214.1 glutathione S-transferase -
  EL026_RS20410 (NCTC13629_04053) - 4334003..4334302 (+) 300 WP_005165217.1 helix-turn-helix transcriptional regulator -
  EL026_RS20415 (NCTC13629_04054) - 4334304..4335632 (+) 1329 WP_005165219.1 type II toxin-antitoxin system HipA family toxin -
  EL026_RS20420 (NCTC13629_04055) ssb 4335721..4336269 (-) 549 WP_005165221.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EL026_RS20425 (NCTC13629_04056) uvrA 4336798..4339629 (+) 2832 WP_005165223.1 excinuclease ABC subunit UvrA -
  EL026_RS20430 (NCTC13629_04057) - 4339688..4340041 (-) 354 WP_005165225.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19084.10 Da        Isoelectric Point: 4.9567

>NTDB_id=1118521 EL026_RS20420 WP_005165221.1 4335721..4336269(-) (ssb) [Yersinia enterocolitica subsp. enterocolitica strain NCTC13629]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1118521 EL026_RS20420 WP_005165221.1 4335721..4336269(-) (ssb) [Yersinia enterocolitica subsp. enterocolitica strain NCTC13629]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1NLP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.913

100

0.747
  ssb Glaesserella parasuis strain SC1401

55.729

100

0.588
  ssb Neisseria gonorrhoeae MS11

46.809

100

0.484
  ssb Neisseria meningitidis MC58

46.703

100

0.467

Multiple sequence alignment