Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ELZ48_RS07785 Genome accession   NZ_LR134089
Coordinates   1596990..1597865 (-) Length   291 a.a.
NCBI ID   WP_115338567.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain NCTC7666     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1591990..1602865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ48_RS07770 (NCTC7666_01612) xerC 1592247..1593137 (-) 891 WP_037538546.1 tyrosine recombinase XerC -
  ELZ48_RS07775 (NCTC7666_01613) trmFO 1593256..1594563 (-) 1308 WP_041080450.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ELZ48_RS07780 (NCTC7666_01614) topA 1594718..1596784 (-) 2067 WP_002483473.1 type I DNA topoisomerase -
  ELZ48_RS07785 (NCTC7666_01615) dprA 1596990..1597865 (-) 876 WP_115338567.1 DNA-processing protein DprA Machinery gene
  ELZ48_RS07790 (NCTC7666_01616) sucD 1598173..1599078 (-) 906 WP_002483475.1 succinate--CoA ligase subunit alpha -
  ELZ48_RS07795 (NCTC7666_01617) sucC 1599100..1600266 (-) 1167 WP_002483476.1 ADP-forming succinate--CoA ligase subunit beta -
  ELZ48_RS07800 (NCTC7666_01618) - 1600374..1601144 (-) 771 WP_041080446.1 ribonuclease HII -
  ELZ48_RS07805 (NCTC7666_01619) ylqF 1601151..1602011 (-) 861 WP_037538552.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33756.48 Da        Isoelectric Point: 10.3610

>NTDB_id=1118092 ELZ48_RS07785 WP_115338567.1 1596990..1597865(-) (dprA) [Staphylococcus saprophyticus strain NCTC7666]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGIVKITAKNENVYRLYVTTNFEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1118092 ELZ48_RS07785 WP_115338567.1 1596990..1597865(-) (dprA) [Staphylococcus saprophyticus strain NCTC7666]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAATAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTTGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTTACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGCACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGTGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

37.248

100

0.381
  dprA Vibrio campbellii strain DS40M4

36.395

100

0.368
  dprA/cilB/dalA Streptococcus mitis SK321

36.207

99.656

0.361

Multiple sequence alignment