Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ELZ49_RS06035 Genome accession   NZ_LR134086
Coordinates   1218888..1219760 (+) Length   290 a.a.
NCBI ID   WP_000620187.1    Uniprot ID   A0AAE2ZTP9
Organism   Staphylococcus aureus strain NCTC13142     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1213888..1224760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ49_RS06010 (NCTC13142_01154) sucC 1214003..1215169 (+) 1167 WP_001020802.1 ADP-forming succinate--CoA ligase subunit beta -
  ELZ49_RS06015 (NCTC13142_01155) sucD 1215191..1216099 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  ELZ49_RS06020 (NCTC13142_01156) - 1216326..1217444 (+) 1119 WP_001041672.1 LysM peptidoglycan-binding domain-containing protein -
  ELZ49_RS14765 fmhC 1217472..1218715 (+) 1244 Protein_1138 FemA/FemB family glycyltransferase FmhC -
  ELZ49_RS06035 (NCTC13142_01159) dprA 1218888..1219760 (+) 873 WP_000620187.1 DNA-processing protein DprA Machinery gene
  ELZ49_RS06040 (NCTC13142_01160) topA 1219934..1222009 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  ELZ49_RS06045 (NCTC13142_01161) trmFO 1222165..1223472 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33609.00 Da        Isoelectric Point: 9.5142

>NTDB_id=1117995 ELZ49_RS06035 WP_000620187.1 1218888..1219760(+) (dprA) [Staphylococcus aureus strain NCTC13142]
MIRLFLLKLYWSHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1117995 ELZ49_RS06035 WP_000620187.1 1218888..1219760(+) (dprA) [Staphylococcus aureus strain NCTC13142]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGTCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA Staphylococcus aureus N315

98.966

100

0.99
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

37.809

97.586

0.369

Multiple sequence alignment