Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ELZ47_RS09585 Genome accession   NZ_LR134002
Coordinates   1918172..1918666 (-) Length   164 a.a.
NCBI ID   WP_002896496.1    Uniprot ID   A0A2X3XJA2
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1913172..1923666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS09550 (NCTC10904_01870) - 1913562..1913954 (-) 393 WP_125332809.1 hypothetical protein -
  ELZ47_RS09555 (NCTC10904_01871) - 1913966..1914586 (-) 621 WP_125356086.1 CPBP family intramembrane glutamic endopeptidase -
  ELZ47_RS09560 (NCTC10904_01872) - 1914591..1915766 (-) 1176 WP_125332047.1 ABC transporter permease -
  ELZ47_RS09565 (NCTC10904_01873) - 1915780..1916448 (-) 669 WP_125356085.1 ABC transporter ATP-binding protein -
  ELZ47_RS09570 (NCTC10904_01874) - 1916445..1917173 (-) 729 WP_125332043.1 hypothetical protein -
  ELZ47_RS09575 - 1917706..1917783 (+) 78 Protein_1812 DUF1129 domain-containing protein -
  ELZ47_RS09580 (NCTC10904_01876) rpsR 1917896..1918135 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  ELZ47_RS09585 (NCTC10904_01877) ssbA 1918172..1918666 (-) 495 WP_002896496.1 single-stranded DNA-binding protein Machinery gene
  ELZ47_RS09590 (NCTC10904_01878) rpsF 1918678..1918968 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  ELZ47_RS09595 (NCTC10904_01879) hutI 1919147..1920412 (-) 1266 WP_125356084.1 imidazolonepropionase -
  ELZ47_RS09600 (NCTC10904_01880) - 1920612..1922639 (+) 2028 WP_125332039.1 urocanate hydratase -
  ELZ47_RS09605 (NCTC10904_01881) ftcD 1922762..1923661 (+) 900 WP_101771756.1 glutamate formimidoyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18104.75 Da        Isoelectric Point: 4.7187

>NTDB_id=1117835 ELZ47_RS09585 WP_002896496.1 1918172..1918666(-) (ssbA) [Streptococcus sanguinis strain NCTC 10904]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRSNREGQSSGGYGGNSFGGSSAPSYGSADSSNQVPNFSRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1117835 ELZ47_RS09585 WP_002896496.1 1918172..1918666(-) (ssbA) [Streptococcus sanguinis strain NCTC 10904]
ATGATTAATAACGTTGTACTGGTGGGTCGCATGACCCGTGATGCCGAGCTTCGCTATACTCCGCAGAACCAAGCGGTCGC
AACATTTACTCTAGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGCGAGAAGCAGATTTTATCAATGTTGTCATCT
GGCGCCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGAGCCCTGATCGGAATTACAGGCCGTATTCAAACGCGT
AACTACGAGAATCAGCAAGGCCAGCGTGTCTATGTCACAGAAGTTGTTGCGGACAATTTCCAACTCCTGGAAAGCCGCTC
TAACCGTGAAGGTCAGTCATCTGGCGGATACGGTGGGAACAGCTTCGGCGGCAGCTCTGCTCCAAGTTATGGCAGTGCAG
ACTCGTCTAACCAAGTACCGAACTTTTCTCGTGATGAGAGCCCATTTGGCAATTCTAACCCGATGGATATCTCAGACGAC
GATCTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3XJA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.634

0.366
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.724

70.732

0.366

Multiple sequence alignment